Motif IL_97118.1 Version IL_97118.1 of this group appears in releases 2.0 to 2.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | break | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-13 | 3-11 | 3-12 | 4-11 | 4-12 | 5-10 | 6-9 | 7-8 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | ➜ | 3JAM | 0.1229 | 1 | 2 | SSU rRNA | G | 142 | G | 143 | A | 144 | U | 145 | A | 146 | U | 147 | C | 148 | * | G | 164 | C | 165 | U | 166 | A | 167 | A | 168 | A | 170 | C | 171 | cWW | cWW | tWH | tWH | ntSH | tHW | ncWW | cWW | ||
| 2 | ➜ | 5A2Q | 0.0967 | 1 | 2 | SSU rRNA | G | 145 | G | 146 | A | 147 | U | 148 | A | 149 | A | 150 | C | 151 | * | G | 167 | C | 168 | U | 169 | A | 170 | A | 171 | A | 173 | C | 174 | cWW | cWW | ntWH | tWH | tWH | tHW | tHW | cWW | ||
| 3 | ➜ | 4BTS | 0.0000 | 1 | DA | SSU rRNA | G | 137 | G | 138 | A | 139 | U | 140 | A | 141 | A | 142 | C | 143 | * | G | 159 | C | 160 | U | 161 | A | 162 | A | 163 | A | 165 | C | 166 | cWW | cWW | tWH | tWH | tHW | tHW | cWW | |||
| 4 | ➜ | 3J7A | 0.1089 | 1 | A | SSU rRNA | G | 141 | G | 142 | A | 143 | U | 144 | A | 145 | A | 146 | C | 147 | * | G | 163 | C | 164 | U | 165 | A | 166 | A | 167 | A | 169 | C | 170 | cWW | cWW | tWH | tWH | tHW | tHW | cWW | |||
| 5 | ➜ | 4V88 | 0.1016 | 1 | tWH-tWH-tHW-tHW | A6 | SSU rRNA | G | 143 | U | 144 | A | 145 | U | 146 | A | 147 | A | 148 | C | 149 | * | G | 165 | C | 166 | U | 167 | A | 168 | A | 169 | A | 171 | C | 172 | cWW | ncWW | tWH | tWH | tHW | tHW | cWW | ||
| 6 | ➜ | 3J9W | 0.1611 | 1 | AA | SSU rRNA | G | 146 | G | 147 | A | 148 | U | 149 | A | 150 | A | 151 | C | 152 | * | G | 167 | C | 168 | U | 169 | A | 170 | A | 171 | A | 173 | C | 174 | cWW | cWW | tWH | tWH | tHW | tHW | cWW | |||
| 7 | ➜ | 4V4Q | 0.1676 | 1 | CA | SSU rRNA | G | 147 | G | 148 | A | 149 | U | 150 | A | 151 | A | 152 | C | 153 | * | G | 168 | C | 169 | U | 170 | A | 171 | A | 172 | A | 174 | C | 175 | cWW | cWW | tWH | tWH | tHW | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAAC*GCUAAUAC | 5 |
| GUAUAAC*GCUAAUAC | 1 |
| GGAUAUC*GCUAAUAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAA*CUAAUA | 5 |
| UAUAA*CUAAUA | 1 |
| GAUAU*CUAAUA | 1 |
Release history
| Release | 2.0 |
|---|---|
| Date | 2017-04-24 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- tWH-tWH-tHW-tHW (1)
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-tHW-cWW
- Heat map statistics
- Min 0.10 | Avg 0.12 | Max 0.18
Coloring options: