Equivalence class NR_2.0_89429.2 Obsolete
| # | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
|---|---|---|---|---|---|---|---|---|---|---|
| 1 | 4FE5|1|B (rep) | Purine riboswitch | xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.32 | 2012-06-27 | ||
| 2 | 3FO4|1|A | Purine riboswitch | Guanine riboswitch C74U mutant | RF00167 | Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine | X-ray diffraction | 1.9 | 2009-06-23 | ||
| 3 | 2XNZ|1|A | Purine riboswitch | Guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening | X-ray diffraction | 1.59 | 2011-04-06 |
| 4 | 2EEV|1|A | Purine riboswitch | guanine riboswitch | RF00167 | Guanine riboswitch U22C, A52G mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||
| 5 | 2G9C|1|A | Purine riboswitch | guanine riboswitch | RF00167 | Modified pyrimidines Specifically bind the purine riboswitch | X-ray diffraction | 1.7 | 2006-11-21 | ||
| 6 | 3FO6|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Crystal structure of guanine riboswitch bound to 6-O-methylguanine | X-ray diffraction | 1.9 | 2009-06-23 | ||
| 7 | 3GAO|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Crystal structure of the guanine riboswitch bound to xanthine. | X-ray diffraction | 1.9 | 2009-06-23 | ||
| 8 | 3GER|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Guanine riboswitch bound to 6-chloroguanine | X-ray diffraction | 1.7 | 2009-06-23 | ||
| 9 | 2EET|1|A | Purine riboswitch | Guanine Riboswitch | RF00167 | Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||
| 10 | 4FEN|1|B | Purine riboswitch | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.35 | 2013-02-27 | ||
| 11 | 4FEO|1|B | Purine riboswitch | U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-ray diffraction | 1.6 | 2013-02-27 | ||
| 12 | 4FEP|1|B | Purine riboswitch | A24U/U25A/A46G/C74U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-ray diffraction | 1.65 | 2013-02-27 | ||
| 13 | 2EES|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Guanine riboswitch A21U, U75A mutant bound to hypoxanthine | X-ray diffraction | 1.75 | 2007-11-13 | ||
| 14 | 2EEU|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Guanine riboswitch U22A, A52U mutant bound to hypoxanthine | X-ray diffraction | 1.95 | 2007-11-13 | ||
| 15 | 3DS7|1|A | Purine riboswitch | 67-MER | RF00167 | Structure of an RNA-2'-deoxyguanosine complex | X-ray diffraction | 1.85 | 2009-02-17 | ||
| 16 | 4FEJ|1|B | Purine riboswitch | A24U mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.5 | 2013-02-27 | ||
| 17 | 3DS7|1|B | Purine riboswitch | 67-MER | RF00167 | Structure of an RNA-2'-deoxyguanosine complex | X-ray diffraction | 1.85 | 2009-02-17 | ||
| 18 | 4FEL|1|B | Purine riboswitch | U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | RF00167 | Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-ray diffraction | 1.6 | 2013-02-27 | ||
| 19 | 2XO0|1|A | Purine riboswitch | GUANINE RIBOSWITCH | Bacillus subtilis | Bacteria | RF00167 | xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening | X-ray diffraction | 1.7 | 2011-04-06 |
| 20 | 2XNW|1|A | Purine riboswitch | GUANINE RIBOSWITCH | Bacillus subtilis | Bacteria | RF00167 | XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING | X-ray diffraction | 1.5 | 2011-04-06 |
| 21 | 2XO1|1|A | Purine riboswitch | Guanine riboswitch | Bacillus subtilis | Bacteria | RF00167 | xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine | X-ray diffraction | 1.6 | 2011-04-06 |
| 22 | 3GOT|1|A | Purine riboswitch | Guanine riboswitch | RF00167 | Guanine riboswitch C74U mutant bound to 2-fluoroadenine. | X-ray diffraction | 1.95 | 2009-06-23 |
Release history
| Release | 2.36 | 2.37 | 2.38 | 2.39 | 2.40 | 2.41 | 2.42 | 2.43 | 2.44 | 2.45 | 2.46 | 2.47 | 2.48 | 2.49 | 2.50 | 2.51 | 2.52 | 2.53 | 2.54 | 2.55 | 2.56 | 2.57 | 2.58 | 2.59 | 2.60 | 2.61 | 2.62 | 2.63 | 2.64 | 2.65 | 2.66 | 2.67 | 2.68 | 2.69 | 2.70 | 2.71 | 2.72 | 2.73 | 2.74 | 2.75 | 2.76 | 2.77 | 2.78 | 2.79 | 2.80 | 2.81 | 2.82 | 2.83 | 2.84 | 2.85 | 2.86 | 2.87 | 2.88 | 2.89 | 2.90 | 2.91 | 2.92 | 2.93 | 2.94 | 2.95 | 2.96 | 2.97 | 2.98 | 2.99 | 2.100 | 2.101 | 2.102 | 2.103 | 2.104 | 2.105 | 2.106 | 2.107 | 2.108 | 2.109 | 2.110 | 2.111 | 2.112 | 2.113 | 2.114 | 2.115 | 2.116 | 2.117 | 2.118 | 2.119 | 2.120 | 2.121 | 2.122 | 2.123 | 2.124 | 2.125 | 2.126 | 2.127 | 2.128 | 2.129 | 2.130 | 2.131 | 2.132 | 2.133 | 2.134 | 2.135 | 2.136 | 2.137 | 2.138 | 2.139 | 2.140 | 2.141 | 2.142 | 2.143 | 2.144 | 2.145 | 2.146 | 2.147 | 2.148 | 2.149 | 2.150 | 2.151 | 2.152 | 2.153 | 2.154 | 2.155 | 2.156 | 2.157 | 2.158 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2015-08-14 | 2015-08-21 | 2015-08-28 | 2015-09-04 | 2015-09-11 | 2015-09-18 | 2015-09-25 | 2015-10-02 | 2015-10-09 | 2015-10-16 | 2015-10-23 | 2015-10-30 | 2015-11-06 | 2015-11-13 | 2015-11-20 | 2015-11-27 | 2015-12-04 | 2015-12-11 | 2015-12-18 | 2015-12-25 | 2016-01-01 | 2016-01-08 | 2016-01-15 | 2016-01-22 | 2016-01-29 | 2016-02-05 | 2016-02-12 | 2016-02-19 | 2016-02-26 | 2016-03-04 | 2016-03-11 | 2016-03-18 | 2016-03-25 | 2016-04-01 | 2016-04-08 | 2016-04-15 | 2016-04-22 | 2016-04-29 | 2016-05-06 | 2016-05-13 | 2016-05-20 | 2016-05-27 | 2016-06-03 | 2016-06-10 | 2016-06-17 | 2016-06-24 | 2016-07-01 | 2016-07-08 | 2016-07-15 | 2016-07-22 | 2016-07-29 | 2016-08-05 | 2016-08-12 | 2016-08-19 | 2016-08-26 | 2016-09-02 | 2016-09-09 | 2016-09-16 | 2016-09-23 | 2016-09-30 | 2016-10-07 | 2016-10-14 | 2016-10-21 | 2016-10-28 | 2016-11-04 | 2016-11-11 | 2016-11-18 | 2016-11-25 | 2016-12-02 | 2016-12-09 | 2016-12-16 | 2016-12-23 | 2016-12-30 | 2017-01-06 | 2017-01-13 | 2017-01-20 | 2017-01-27 | 2017-02-03 | 2017-02-10 | 2017-02-17 | 2017-02-24 | 2017-03-03 | 2017-03-10 | 2017-03-17 | 2017-03-24 | 2017-03-31 | 2017-04-11 | 2017-04-15 | 2017-04-26 | 2017-04-29 | 2017-05-09 | 2017-05-15 | 2017-05-20 | 2017-05-27 | 2017-06-07 | 2017-06-11 | 2017-06-21 | 2017-06-24 | 2017-06-28 | 2017-07-04 | 2017-07-10 | 2017-07-15 | 2017-07-26 | 2017-07-31 | 2017-08-05 | 2017-08-12 | 2017-08-19 | 2017-08-26 | 2017-09-03 | 2017-09-09 | 2017-09-16 | 2017-09-23 | 2017-09-30 | 2017-10-07 | 2017-10-14 | 2017-10-21 | 2017-10-28 | 2017-11-03 | 2017-11-10 | 2017-11-17 | 2017-11-24 | 2017-12-01 | 2017-12-08 |
Parents
| This class | Parent classes | Release id | Intersection | Added to this class | Only in parent |
|---|---|---|---|---|---|
| NR_2.0_89429.2 | NR_all_89429.1 | 2.36 | (22) 3DS7|1|B, 4FE5|1|B, 2EEV|1|A, 3DS7|1|A, 3GOT|1|A, 4FEP|1|B, 2EEU|1|A, 2XO1|1|A, 3GER|1|A, 4FEO|1|B, 2EET|1|A, 2XO0|1|A, 3GAO|1|A, 4FEN|1|B, 2EES|1|A, 2XNZ|1|A, 3FO6|1|A, 4FEL|1|B, 2XNW|1|A, 3FO4|1|A, 4FEJ|1|B, 2G9C|1|A | (0) | (5) 2B57|1|A, 3G4M|1|A, 3GES|1|A, 3GOG|1|A, 2EEW|1|A |
Children
| This class | Descendant classes | Release id | Intersection | Only in this class | Added to child |
|---|---|---|---|---|---|
| NR_2.0_89429.2 | NR_2.0_89429.3 | 3.0 | (21) 4FEN|1|B, 2EEU|1|A, 2XNZ|1|A, 3FO4|1|A, 3GOT|1|A, 4FEL|1|B, 2EET|1|A, 2XNW|1|A, 3DS7|1|B, 3GER|1|A, 4FEP|1|B, 2EES|1|A, 2G9C|1|A, 3DS7|1|A, 3GAO|1|A, 4FEJ|1|B, 4FEO|1|B, 2EEV|1|A, 2XO1|1|A, 3FO6|1|A, 4FE5|1|B | (1) 2XO0|1|A | (1) 1U8D|1|A |
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).| #S | PDB | Title | Method | Resolution | Length |
|---|---|---|---|---|---|
| 1 | 4FEO|1|B | Crystal structure of the AU25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-RAY DIFFRACTION | 1.6 | 67 |
| 2 | 4FEN|1|B | Crystal structure of the A24U/U25A/A46G mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.35 | 67 |
| 3 | 4FEP|1|B | Crystal structure of the A24U/U25A/A46G/C74U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with 2,6-diaminopurine | X-RAY DIFFRACTION | 1.65 | 67 |
| 4 | 4FEL|1|B | Crystal structure of the U25A/A46G mutant of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.6 | 67 |
| 5 | 2EES|1|A | Guanine riboswitch A21U, U75A mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.75 | 67 |
| 6 | 2EET|1|A | Guanine Riboswitch A21G, U75C mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 |
| 7 | 2XNZ|1|A | xpt-pbuX C74U Riboswitch from B. subtilis bound to acetoguanamine identified by virtual screening | X-RAY DIFFRACTION | 1.59 | 65 |
| 8 | 2G9C|1|A | Modified pyrimidines Specifically bind the purine riboswitch | X-RAY DIFFRACTION | 1.7 | 67 |
| 9 | 3GER|1|A | Guanine riboswitch bound to 6-chloroguanine | X-RAY DIFFRACTION | 1.7 | 67 |
| 10 | 3FO4|1|A | Crystal structure of guanine riboswitch C74U mutant bound to 6-chloroguanine | X-RAY DIFFRACTION | 1.9 | 63 |
| 11 | 4FE5|1|B | Crystal structure of the xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.32 | 67 |
| 12 | 2XO1|1|A | xpt-pbuX C74U Riboswitch from B. subtilis bound to N6-methyladenine | X-RAY DIFFRACTION | 1.6 | 65 |
| 13 | 3FO6|1|A | Crystal structure of guanine riboswitch bound to 6-O-methylguanine | X-RAY DIFFRACTION | 1.9 | 67 |
| 14 | 4FEJ|1|B | Crystal structure of the A24U mutant xpt-pbuX guanine riboswitch aptamer domain in complex with hypoxanthine | X-RAY DIFFRACTION | 1.5 | 67 |
| 15 | 3GOT|1|A | Guanine riboswitch C74U mutant bound to 2-fluoroadenine. | X-RAY DIFFRACTION | 1.95 | 67 |
| 16 | 2XO0|1|A | xpt-pbuX C74U Riboswitch from B. subtilis bound to 24-diamino-1,3,5- triazine identified by virtual screening | X-RAY DIFFRACTION | 1.7 | 65 |
| 17 | 3GAO|1|A | Crystal structure of the guanine riboswitch bound to xanthine. | X-RAY DIFFRACTION | 1.9 | 67 |
| 18 | 2XNW|1|A | XPT-PBUX C74U RIBOSWITCH FROM B. SUBTILIS BOUND TO A TRIAZOLO- TRIAZOLE-DIAMINE LIGAND IDENTIFIED BY VIRTUAL SCREENING | X-RAY DIFFRACTION | 1.5 | 65 |
| 19 | 2EEU|1|A | Guanine riboswitch U22A, A52U mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 |
| 20 | 2EEV|1|A | Guanine riboswitch U22C, A52G mutant bound to hypoxanthine | X-RAY DIFFRACTION | 1.95 | 67 |
| 21 | 3DS7|1|A | Structure of an RNA-2'-deoxyguanosine complex | X-RAY DIFFRACTION | 1.85 | 67 |
| 22 | 3DS7|1|B | Structure of an RNA-2'-deoxyguanosine complex | X-RAY DIFFRACTION | 1.85 | 67 |