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Equivalence class NR_4.0_56101.2 Obsolete

#IFEStandardized nameMoleculeOrganismSourceRfamTitleMethodRes. ÅDate
17O1A|1|B8 (rep)Transfer RNAP-site tRNA-Pro, mRNAEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanElectron microscopy2.42021-09-01
27O1C|1|B8Transfer RNAP-site tRNA-Pro, mRNAEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanElectron microscopy2.62021-09-01
37O19|1|B8Transfer RNAP-site tRNA-Pro, mRNAEscherichia coli K-12BacteriaRF00005Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanElectron microscopy2.92021-09-01
46SZS|1|xTransfer RNAP-site tRNA-Pro(CGG), mRNAEscherichia coliBacteriaRF00005Release factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisElectron microscopy3.062019-12-04
55MGP|1|xTransfer RNAP-site tRNA, mRNAEscherichia coliBacteriaRF00005Structural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsElectron microscopy3.12016-12-14
66ENU|1|xTransfer RNAProline tRNA, mRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of elongation-factor P (EF-P)Electron microscopy3.12017-11-22
76ENF|1|xTransfer RNAproline tRNA, RNA (5'-R(P*CP*CP*G)-3'), mRNAEscherichia coliBacteriaRF00005Cryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PElectron microscopy3.22017-11-22
86NUO|1|XVTransfer RNAP-site tRNA-Pro, mRNAEscherichia coliBacteriaRF00005Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.22020-10-14
96NUO|1|QVTransfer RNAP-site tRNA-Pro, mRNAEscherichia coliBacteriaRF00005Modified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.22020-10-14
106ENJ|1|xTransfer RNAProline tRNA, mRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)Electron microscopy3.72017-11-22
116ENJ|1|9Transfer RNAProline tRNAEscherichia coliBacteriaRF00005Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)Electron microscopy3.72017-11-22
126O3M|1|QVTransfer RNAP-site ASLPro, mRNAEscherichia coliBacteriaRF00005Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.972020-10-14
136O3M|1|XVTransfer RNAP-site ASLPro, mRNAEscherichia coliBacteriaRF00005Unmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-ray diffraction3.972020-10-14

Release history

Release3.1943.1953.1963.1973.1983.1993.2003.2013.2023.2033.2043.2053.2063.207
Date2021-09-012021-09-082021-09-152021-09-222021-09-292021-10-062021-10-132021-10-202021-10-272021-11-032021-11-102021-11-172021-11-242021-12-01

Parents

This classParent classesRelease idIntersectionAdded to this classOnly in parent
NR_4.0_56101.2NR_4.0_56101.13.194(10) 6ENJ|1|x, 6ENJ|1|9, 6ENF|1|x, 5MGP|1|x, 6SZS|1|x, 6O3M|1|XV, 6O3M|1|QV, 6NUO|1|XV, 6NUO|1|QV, 6ENU|1|x(3) 7O1A|1|B8, 7O19|1|B8, 7O1C|1|B8(0)

Children

This class Descendant classesRelease idIntersectionOnly in this classAdded to child
NR_4.0_56101.2NR_4.0_56101.33.208(13) 7O1C|1|B8, 7O1A|1|B8, 7O19|1|B8, 6SZS|1|x, 6O3M|1|XV, 6O3M|1|QV, 6NUO|1|XV, 6NUO|1|QV, 6ENU|1|x, 6ENJ|1|x, 6ENJ|1|9, 6ENF|1|x, 5MGP|1|x(0) (1) 7CPJ|1|9

Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5

#S - ordering by similarity (same as in the heat map).
#SPDBTitleMethodResolutionLength
16NUO|1|QVModified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.276
26O3M|1|QVUnmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.9777
36O3M|1|XVUnmodified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.9777
46NUO|1|XVModified tRNA(Pro) bound to Thermus thermophilus 70S (cognate)X-RAY DIFFRACTION3.276
56SZS|1|xRelease factor-dependent ribosome rescue by BrfA in the Gram-positive bacterium Bacillus subtilisELECTRON MICROSCOPY3.0677
65MGP|1|xStructural basis for ArfA-RF2 mediated translation termination on stop-codon lacking mRNAsELECTRON MICROSCOPY3.177
77O1A|1|B8Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.474
87O1C|1|B8Cryo-EM structure of an Escherichia coli TnaC(R23F)-ribosome-RF2 complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.677
97O19|1|B8Cryo-EM structure of an Escherichia coli TnaC-ribosome complex stalled in response to L-tryptophanELECTRON MICROSCOPY2.977
106ENF|1|xCryo-EM structure of a polyproline-stalled ribosome in the absence of EF-PELECTRON MICROSCOPY3.277
116ENU|1|xPolyproline-stalled ribosome in the presence of elongation-factor P (EF-P)ELECTRON MICROSCOPY3.177
126ENJ|1|xPolyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)ELECTRON MICROSCOPY3.777
136ENJ|1|9Polyproline-stalled ribosome in the presence of A+P site tRNA and elongation-factor P (EF-P)ELECTRON MICROSCOPY3.777
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