Equivalence class NR_all_19951.6 Obsolete
# | IFE | Standardized name | Molecule | Organism | Source | Rfam | Title | Method | Res. Å | Date |
---|---|---|---|---|---|---|---|---|---|---|
1 | 4YCO|1|D (rep) | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
2 | 2ZXU|1|C | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-ray diffraction | 2.75 | 2009-05-26 |
3 | 2ZM5|1|C | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-ray diffraction | 2.55 | 2009-04-14 |
4 | 4YCO|1|E | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
5 | 3FOZ|1|C | tRNA(Phe) | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-ray diffraction | 2.5 | 2009-01-20 | ||||
6 | 3L0U|1|A | Transfer RNA | Unmodified tRNAPhe | Escherichia coli | Bacteria | RF00005 | The crystal structure of unmodified tRNAPhe from Escherichia coli | X-ray diffraction | 3 | 2010-03-16 |
7 | 4YCO|1|F | Transfer RNA | tRNAphe | Escherichia coli | Bacteria | RF00005 | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-ray diffraction | 2.1 | 2015-04-22 |
8 | 4V5E|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
9 | 4V9D|1|BV | Transfer RNA | phenylalanine specific transfer RNA, messenger RNA | Escherichia coli | Bacteria | RF00005 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
10 | 3FOZ|1|D | tRNA(Phe) | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-ray diffraction | 2.5 | 2009-01-20 | ||||
11 | 4V5D|1|AV | Transfer RNA | P AND A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
12 | 4V5D|1|CV | Transfer RNA | P AND A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
13 | 4V9C|1|AV | Transfer RNA | Phenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA, mRNA | Escherichia coli | Bacteria | RF00005 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
14 | 4V5Q|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
15 | 4V5S|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
16 | 4V5L|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
17 | 4V5P|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
18 | 4V5P|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
19 | 4Z3S|1|2w | Transfer RNA | A/E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
20 | 2ZM5|1|D | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-ray diffraction | 2.55 | 2009-04-14 |
21 | 4V6F|1|CC | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
22 | 4V5J|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
23 | 4W2F|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
24 | 5AFI|1|y | Transfer RNA | A/T-site Phe-tRNAPhe, mRNA | Escherichia coli | Bacteria | RF00005 | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | Electron microscopy | 2.9 | 2015-03-11 |
25 | 4V5R|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
26 | 4V5E|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
27 | 4V5R|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
28 | 4V5Q|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
29 | 4V6L|1|AE | Transfer RNA | A/T-site tRNA Phe | Escherichia coli | Bacteria | RF00005 | Structural insights into cognate vs. near-cognate discrimination during decoding. | Electron microscopy | 13.2 | 2014-07-09 |
30 | 2ZXU|1|D | Transfer RNA | tRNA(Phe) | Escherichia coli | Bacteria | RF00005 | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-ray diffraction | 2.75 | 2009-05-26 |
31 | 4V6F|1|BC | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
32 | 4Z3S|1|1w | Transfer RNA | A/E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
33 | 4Y4P|1|1w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
34 | 4V5S|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
35 | 4W2E|1|w | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
36 | 4V9H|1|AV | Transfer RNA | PE hybrid state tRNA Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state | X-ray diffraction | 2.86 | 2014-07-09 |
37 | 1VY5|1|AW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
38 | 4V6K|1|BB | Transfer RNA | A/T-site tRNA Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Structural insights into cognate vs. near-cognate discrimination during decoding. | Electron microscopy | 8.25 | 2014-07-09 |
39 | 4V6K|1|BE | Transfer RNA | A/T-site tRNA Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Structural insights into cognate vs. near-cognate discrimination during decoding. | Electron microscopy | 8.25 | 2014-07-09 |
40 | 4WQU|1|BW | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
41 | 4WQF|1|BW | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
42 | 4WQU|1|DW | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
43 | 4WQF|1|DW | Transfer RNA | P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
44 | 4V5J|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES), MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
45 | 4Z3S|1|1y | Transfer RNA | A/E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
46 | 4W2I|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
47 | 1VY4|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
48 | 4W2E|1|x | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-ray diffraction | 2.9 | 2014-10-01 |
49 | 4Y4P|1|2y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
50 | 4V69|1|AW | Transfer RNA | P-site tRNA fMet (Unmodified bases except for Thymine 54) | Escherichia coli | Bacteria | RF00005 | Ternary complex-bound E.coli 70S ribosome. | Electron microscopy | 6.7 | 2014-07-09 |
51 | 4V7D|1|BW | Transfer RNA | tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure) | Electron microscopy | 7.6 | 2014-07-09 |
52 | 4P6F|1|XW | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
53 | 4W2G|1|AW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
54 | 1VY5|1|CW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
55 | 4WPO|1|DW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
56 | 4Y4P|1|2w | Transfer RNA | A-site and E-site tRNAs, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
57 | 4V6F|1|CB | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
58 | 1VY4|1|AW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
59 | 4V4Y|1|AB | Transfer RNA | tRNA PHE (unmodified bases), mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. | X-ray diffraction | 5.5 | 2014-07-09 |
60 | 4V9D|1|AV | Transfer RNA | phenylalanine specific transfer RNA, messenger RNA | Escherichia coli | Bacteria | RF00005 | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-ray diffraction | 3 | 2014-07-09 |
61 | 4V7C|1|AW | Transfer RNA | tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure) | Electron microscopy | 7.6 | 2014-07-09 |
62 | 4W2G|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
63 | 4W2F|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
64 | 4WQU|1|BY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
65 | 4WPO|1|BY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
66 | 4WQF|1|BY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
67 | 4V4I|1|z | Transfer RNA | P-site PHE-tRNA, MRNA | Escherichia coli | Bacteria | RF00005 | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | X-ray diffraction | 3.71 | 2014-07-09 |
68 | 1VY4|1|CW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
69 | 4W2G|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
70 | 4V6F|1|BB | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
71 | 4V6F|1|BD | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
72 | 4V6F|1|CD | Transfer RNA | TRNA-PHE WITH UNMODIFIED NUCLEOTIDES EXCEPT FOR MIA37, MRNA | Escherichia coli | Bacteria | RF00005 | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-ray diffraction | 3.1 | 2014-07-09 |
73 | 3J46|1|a | Transfer RNA | A-tRNA | Escherichia coli | Bacteria | RF00005 | Structure of the SecY protein translocation channel in action | Electron microscopy | 10.1 | 2013-10-23 |
74 | 4Z3S|1|2y | Transfer RNA | A/E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-ray diffraction | 2.65 | 2015-06-03 |
75 | 4W2F|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
76 | 1VY4|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-ray diffraction | 2.6 | 2014-08-20 |
77 | 4W2G|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.55 | 2014-10-15 |
78 | 4V5G|1|AV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
79 | 4V51|1|AW | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
80 | 4V5G|1|CV | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
81 | 4Y4P|1|1y | Transfer RNA | A-site and E-site tRNAs | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-ray diffraction | 2.5 | 2015-03-18 |
82 | 1VY5|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
83 | 4W2I|1|AY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
84 | 4W2I|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
85 | 4V4Y|1|AD | Transfer RNA | tRNA PHE (unmodified bases), mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. | X-ray diffraction | 5.5 | 2014-07-09 |
86 | 4V9I|1|AW | Transfer RNA | E-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
87 | 4V5D|1|AW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
88 | 4V5C|1|CW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
89 | 4P6F|1|QW | Transfer RNA | E-Site tRNA-Phe or A-Site tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-ray diffraction | 3.6 | 2014-10-01 |
90 | 4V6L|1|AB | Transfer RNA | A/T-site tRNA Phe, mRNA | Escherichia coli | Bacteria | RF00005 | Structural insights into cognate vs. near-cognate discrimination during decoding. | Electron microscopy | 13.2 | 2014-07-09 |
91 | 4WPO|1|BW | Transfer RNA | A-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
92 | 4W2I|1|CY | Transfer RNA | A/P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.7 | 2014-10-15 |
93 | 4WQU|1|DY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-ray diffraction | 2.8 | 2015-01-28 |
94 | 4WPO|1|DY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
95 | 4WQF|1|DY | Transfer RNA | P-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-ray diffraction | 2.8 | 2015-01-28 |
96 | 4W2F|1|CW | Transfer RNA | A/P-site tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-ray diffraction | 2.4 | 2014-10-15 |
97 | 4V4Y|1|AC | Transfer RNA | tRNA PHE (unmodified bases), mRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. | X-ray diffraction | 5.5 | 2014-07-09 |
98 | 4V97|1|AW | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
99 | 4V5D|1|CW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
100 | 4V51|1|CW | Transfer RNA | E-SITE TRNA PHE OR A-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-ray diffraction | 2.8 | 2014-07-09 |
101 | 1VY5|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-ray diffraction | 2.55 | 2014-08-20 |
102 | 4V8J|1|AW | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
103 | 4V5C|1|AW | Transfer RNA | E-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
104 | 4V5Q|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
105 | 4V5E|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
106 | 4V7C|1|AV | Transfer RNA | tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure) | Electron microscopy | 7.6 | 2014-07-09 |
107 | 4V5P|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
108 | 4V5R|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
109 | 4V8J|1|CW | Transfer RNA | tRNA-Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G347U. | X-ray diffraction | 3.9 | 2014-07-09 |
110 | 4V5P|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
111 | 4V97|1|CW | Transfer RNA | E-SITE TRNA PHE OR A-SITE tRNA Phe | Escherichia coli | Bacteria | RF00005 | Crystal structure of the bacterial ribosome ram mutation G299A. | X-ray diffraction | 3.52 | 2014-07-09 |
112 | 4V9I|1|CW | Transfer RNA | E-SITE tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-ray diffraction | 3.3 | 2014-07-09 |
113 | 4V5D|1|AY | Transfer RNA | P AND A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
114 | 4V5J|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
115 | 4V5D|1|CY | Transfer RNA | P AND A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-ray diffraction | 3.5 | 2014-07-09 |
116 | 4V5L|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-ray diffraction | 3.1 | 2014-07-09 |
117 | 4V9C|1|CV | Transfer RNA | Phenylalanine specific transfer RNA, tRNA-Phe, Messenger RNA, mRNA | Escherichia coli | Bacteria | RF00005 | Allosteric control of the ribosome by small-molecule antibiotics | X-ray diffraction | 3.3 | 2014-07-09 |
118 | 4V5S|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
119 | 4V7D|1|BV | Transfer RNA | tRNA, mRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure) | Electron microscopy | 7.6 | 2014-07-09 |
120 | 4V5R|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
121 | 4V5C|1|CY | Transfer RNA | A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
122 | 4V5G|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
123 | 4V5G|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-ray diffraction | 3.6 | 2014-07-09 |
124 | 4V5J|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-ray diffraction | 3.1 | 2014-07-09 |
125 | 4V5Q|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-ray diffraction | 3.1 | 2014-07-09 |
126 | 4W2H|1|AY | Transfer RNA | E-site tRNA Acceptor Stem | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
127 | 4V5E|1|AW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE (UNMODIFIED BASES) | Escherichia coli | Bacteria | RF00005 | Insights into translational termination from the structure of RF2 bound to the ribosome | X-ray diffraction | 3.45 | 2014-07-09 |
128 | 4V5C|1|AY | Transfer RNA | A-SITE PHE-TRNA PHE, MRNA | Escherichia coli | Bacteria | RF00005 | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-ray diffraction | 3.3 | 2014-07-09 |
129 | 4V5S|1|CW | Transfer RNA | E-SITE TRNA PHE OR P-SITE TRNA PHE | Escherichia coli | Bacteria | RF00005 | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-ray diffraction | 3.1 | 2014-07-09 |
130 | 1VY7|1|AY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
131 | 1VY7|1|CY | Transfer RNA | E-site tRNA | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-ray diffraction | 2.8 | 2014-08-20 |
132 | 4W2H|1|CY | Transfer RNA | E-site tRNA Acceptor Stem | Escherichia coli | Bacteria | RF00005 | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-ray diffraction | 2.7 | 2014-10-15 |
Release history
Release | 2.26 |
---|---|
Date | 2015-06-05 |
Parents
Children
Heat map of mutual geometric discrepancy, in Angstroms per nucleotide. Instances are ordered to put similar structures near each other. The colorbar ranges from 0 to the maximum observed discrepancy, up to 0.5
#S - ordering by similarity (same as in the heat map).#S | PDB | Title | Method | Resolution | Length |
---|---|---|---|---|---|
1 | 1VY7|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 5 |
2 | 1VY7|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing short substrate-mimic Cytidine-Cytidine-Puromycin in the A site and acylated tRNA in the P site. | X-RAY DIFFRACTION | 2.8 | 5 |
3 | 4W2H|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 5 |
4 | 2ZM5|1|C | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-RAY DIFFRACTION | 2.55 | 74 |
5 | 2ZXU|1|C | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-RAY DIFFRACTION | 2.75 | 74 |
6 | 2ZXU|1|D | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) and DMASPP | X-RAY DIFFRACTION | 2.75 | 69 |
7 | 2ZM5|1|D | Crystal structure of tRNA modification enzyme MiaA in the complex with tRNA(Phe) | X-RAY DIFFRACTION | 2.55 | 69 |
8 | 3FOZ|1|C | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-RAY DIFFRACTION | 2.5 | 74 |
9 | 4W2H|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (co-crystallized), mRNA and deacylated tRNA in the P site | X-RAY DIFFRACTION | 2.7 | 18 |
10 | 4Z3S|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 66 |
11 | 4Y4P|1|2y | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 66 |
12 | 4W2F|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 66 |
13 | 4W2G|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 66 |
14 | 1VY5|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 66 |
15 | 4W2I|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 66 |
16 | 1VY4|1|CY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 66 |
17 | 4WQU|1|DY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 66 |
18 | 4WQF|1|DY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 66 |
19 | 4WPO|1|DY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 66 |
20 | 4W2G|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 67 |
21 | 4W2I|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 67 |
22 | 1VY5|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 67 |
23 | 1VY4|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 67 |
24 | 4W2E|1|x | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.9 | 67 |
25 | 4WQF|1|BY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 67 |
26 | 4WQU|1|BY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 67 |
27 | 4WPO|1|BY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 67 |
28 | 4W2F|1|AY | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 67 |
29 | 4Y4P|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 67 |
30 | 4Z3S|1|1y | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 67 |
31 | 4V5E|1|CW | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 |
32 | 4V51|1|AW | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 |
33 | 4V51|1|CW | Structure of the Thermus thermophilus 70S ribosome complexed with mRNA, tRNA and paromomycin | X-RAY DIFFRACTION | 2.8 | 76 |
34 | 4P6F|1|QW | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-RAY DIFFRACTION | 3.6 | 76 |
35 | 4V97|1|AW | Crystal structure of the bacterial ribosome ram mutation G299A. | X-RAY DIFFRACTION | 3.52 | 76 |
36 | 4V8J|1|AW | Crystal structure of the bacterial ribosome ram mutation G347U. | X-RAY DIFFRACTION | 3.9 | 76 |
37 | 4V5C|1|AW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 |
38 | 4V5D|1|CW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 76 |
39 | 4V5D|1|AW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 76 |
40 | 4V5C|1|CW | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 76 |
41 | 4V8J|1|CW | Crystal structure of the bacterial ribosome ram mutation G347U. | X-RAY DIFFRACTION | 3.9 | 76 |
42 | 4V97|1|CW | Crystal structure of the bacterial ribosome ram mutation G299A. | X-RAY DIFFRACTION | 3.52 | 76 |
43 | 4P6F|1|XW | Crystal structure of the peptolide 12C bound to bacterial ribosome | X-RAY DIFFRACTION | 3.6 | 76 |
44 | 4V9I|1|CW | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 76 |
45 | 4V9I|1|AW | Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon | X-RAY DIFFRACTION | 3.3 | 76 |
46 | 4V5E|1|AW | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 |
47 | 4V5J|1|CW | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 |
48 | 4V5J|1|AW | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 |
49 | 4V69|1|AW | Ternary complex-bound E.coli 70S ribosome. | ELECTRON MICROSCOPY | 6.7 | 76 |
50 | 4V5L|1|AW | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-RAY DIFFRACTION | 3.1 | 76 |
51 | 4V5Q|1|AW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
52 | 4V5S|1|AW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
53 | 4V5P|1|AW | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
54 | 4V5P|1|CW | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
55 | 4V5R|1|AW | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
56 | 4V5R|1|CW | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
57 | 4V5G|1|AW | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 |
58 | 4V5G|1|CW | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 |
59 | 4V5S|1|CW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
60 | 4V5Q|1|CW | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
61 | 4V6F|1|CD | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
62 | 4V6F|1|BD | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
63 | 4V4Y|1|AD | Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. | X-RAY DIFFRACTION | 5.5 | 76 |
64 | 4V9H|1|AV | Crystal structure of the ribosome bound to elongation factor G in the guanosine triphosphatase state | X-RAY DIFFRACTION | 2.86 | 74 |
65 | 4V7C|1|AW | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure) | ELECTRON MICROSCOPY | 7.6 | 76 |
66 | 4V9D|1|AV | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 76 |
67 | 4V7D|1|BW | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure) | ELECTRON MICROSCOPY | 7.6 | 76 |
68 | 3L0U|1|A | The crystal structure of unmodified tRNAPhe from Escherichia coli | X-RAY DIFFRACTION | 3 | 73 |
69 | 4V9C|1|CV | Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 76 |
70 | 4V7D|1|BV | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA*EF-G structure) | ELECTRON MICROSCOPY | 7.6 | 76 |
71 | 4V7C|1|AV | Structure of the Ribosome with Elongation Factor G Trapped in the Pre-Translocation State (pre-translocation 70S*tRNA structure) | ELECTRON MICROSCOPY | 7.6 | 76 |
72 | 4V5D|1|AY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 |
73 | 4V5C|1|CY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 75 |
74 | 4V5C|1|AY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A-site tRNA, deacylated P-site tRNA, and E-site tRNA. | X-RAY DIFFRACTION | 3.3 | 75 |
75 | 4V5D|1|CY | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 |
76 | 4Y4P|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 67 |
77 | 4WPO|1|BW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 66 |
78 | 1VY4|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 66 |
79 | 1VY5|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 66 |
80 | 4W2F|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 67 |
81 | 4W2G|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 67 |
82 | 4W2I|1|AW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 67 |
83 | 4W2I|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with negamycin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.7 | 65 |
84 | 4W2F|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with amicoumacin, mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.4 | 65 |
85 | 4W2G|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with pactamycin (soaked), mRNA and three deacylated tRNAs in the A, P and E sites | X-RAY DIFFRACTION | 2.55 | 65 |
86 | 1VY5|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. | X-RAY DIFFRACTION | 2.55 | 64 |
87 | 1VY4|1|CW | Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. | X-RAY DIFFRACTION | 2.6 | 64 |
88 | 4WPO|1|DW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G in the pre-translocational state | X-RAY DIFFRACTION | 2.8 | 64 |
89 | 4Y4P|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome with rRNA modifications and bound to mRNA and A-, P- and E-site tRNAs at 2.5A resolution | X-RAY DIFFRACTION | 2.5 | 65 |
90 | 4V6F|1|CB | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
91 | 4V6F|1|BB | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
92 | 3J46|1|a | Structure of the SecY protein translocation channel in action | ELECTRON MICROSCOPY | 10.1 | 75 |
93 | 4Z3S|1|1w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 67 |
94 | 4Z3S|1|2w | Crystal structure of the Thermus thermophilus 70S ribosome in complex with antibiotic A201A, mRNA and three tRNAs in the A, P and E sites at 2.65A resolution | X-RAY DIFFRACTION | 2.65 | 66 |
95 | 4V4Y|1|AB | Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. | X-RAY DIFFRACTION | 5.5 | 76 |
96 | 4V4Y|1|AC | Crystal structure of the 70S Thermus thermophilus ribosome with translocated and rotated Shine-Dalgarno Duplex. | X-RAY DIFFRACTION | 5.5 | 76 |
97 | 4V5D|1|CV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 |
98 | 4V5G|1|CV | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 |
99 | 4V5G|1|AV | The crystal structure of the 70S ribosome bound to EF-Tu and tRNA | X-RAY DIFFRACTION | 3.6 | 76 |
100 | 4V5D|1|AV | Structure of the Thermus thermophilus 70S ribosome in complex with mRNA, paromomycin, acylated A- and P-site tRNAs, and E-site tRNA. | X-RAY DIFFRACTION | 3.5 | 75 |
101 | 4V5J|1|CV | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 |
102 | 4V5E|1|AV | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 |
103 | 4V5J|1|AV | Structure of the 70S ribosome bound to Release factor 2 and a substrate analog provides insights into catalysis of peptide release | X-RAY DIFFRACTION | 3.1 | 75 |
104 | 4V5E|1|CV | Insights into translational termination from the structure of RF2 bound to the ribosome | X-RAY DIFFRACTION | 3.45 | 76 |
105 | 4V5R|1|CV | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
106 | 4V5R|1|AV | The crystal structure of EF-Tu and Trp-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
107 | 4V5P|1|CV | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
108 | 4V5P|1|AV | The crystal structure of EF-Tu and A9C-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
109 | 4V5Q|1|AV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
110 | 4V5S|1|AV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
111 | 4V5L|1|AV | The structure of EF-Tu and aminoacyl-tRNA bound to the 70S ribosome with a GTP analog | X-RAY DIFFRACTION | 3.1 | 76 |
112 | 4V5S|1|CV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a cognate codon on the 70S ribosome. | X-RAY DIFFRACTION | 3.1 | 76 |
113 | 4V5Q|1|CV | The crystal structure of EF-Tu and G24A-tRNA-Trp bound to a near- cognate codon on the 70S ribosome | X-RAY DIFFRACTION | 3.1 | 76 |
114 | 4V9D|1|BV | Structures of the bacterial ribosome in classical and hybrid states of tRNA binding | X-RAY DIFFRACTION | 3 | 76 |
115 | 4V9C|1|AV | Allosteric control of the ribosome by small-molecule antibiotics | X-RAY DIFFRACTION | 3.3 | 76 |
116 | 4V6F|1|CC | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
117 | 4V6F|1|BC | Elongation complex of the 70S ribosome with three tRNAs and mRNA. | X-RAY DIFFRACTION | 3.1 | 75 |
118 | 4W2E|1|w | Crystal structure of Elongation Factor 4 (EF4/LepA) bound to the Thermus thermophilus 70S ribosome | X-RAY DIFFRACTION | 2.9 | 68 |
119 | 4WQU|1|BW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 69 |
120 | 4WQF|1|BW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 69 |
121 | 4WQF|1|DW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G and fusidic acid in the post-translocational state | X-RAY DIFFRACTION | 2.8 | 69 |
122 | 4WQU|1|DW | Crystal structure of the Thermus thermophilus 70S ribosome in complex with elongation factor G trapped by the antibiotic dityromycin | X-RAY DIFFRACTION | 2.8 | 69 |
123 | 4V4I|1|z | Crystal Structure of a 70S Ribosome-tRNA Complex Reveals Functional Interactions and Rearrangements. | X-RAY DIFFRACTION | 3.71 | 67 |
124 | 4V6K|1|BE | Structural insights into cognate vs. near-cognate discrimination during decoding. | ELECTRON MICROSCOPY | 8.25 | 66 |
125 | 4V6L|1|AE | Structural insights into cognate vs. near-cognate discrimination during decoding. | ELECTRON MICROSCOPY | 13.2 | 66 |
126 | 4YCO|1|F | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-RAY DIFFRACTION | 2.1 | 71 |
127 | 4YCO|1|D | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-RAY DIFFRACTION | 2.1 | 74 |
128 | 4YCO|1|E | E. coli dihydrouridine synthase C (DusC) in complex with tRNAPhe | X-RAY DIFFRACTION | 2.1 | 67 |
129 | 5AFI|1|y | 2.9A Structure of E. coli ribosome-EF-TU complex by cs-corrected cryo-EM | ELECTRON MICROSCOPY | 2.9 | 67 |
130 | 4V6K|1|BB | Structural insights into cognate vs. near-cognate discrimination during decoding. | ELECTRON MICROSCOPY | 8.25 | 66 |
131 | 4V6L|1|AB | Structural insights into cognate vs. near-cognate discrimination during decoding. | ELECTRON MICROSCOPY | 13.2 | 66 |
132 | 3FOZ|1|D | Structure of E. coli Isopentenyl-tRNA transferase in complex with E. coli tRNA(Phe) | X-RAY DIFFRACTION | 2.5 | 69 |
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