5WYK Internal, Hairpin and 3-way Junction Loop Motifs
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/5A/120:125 | NA | NA |
| 2 | ➜ | 1/5A/196:201 | NA | NA |
| 3 | ➜ | 1/5A/360:365 | NA | NA |
| 4 | ➜ | 1/5A/515:522 | NA | NA |
| 5 | ➜ | 1/SA/154:160 | NA | NA |
| 6 | ➜ | 1/SA/190:195 | NA | NA |
| 7 | ➜ | 1/SA/276:279 | NA | NA |
| 8 | ➜ | 1/SA/330:338 | NA | NA |
| 9 | ➜ | 1/SA/368:373 | NA | NA |
| 10 | ➜ | 1/SA/393:404 | NA | NA |
| 11 | ➜ | 1/SA/414:419 | NA | NA |
| 12 | ➜ | 1/SA/450:456 | NA | NA |
| 13 | ➜ | 1/SA/491:496 | NA | NA |
| 14 | ➜ | 1/SA/520:532 | NA | NA |
| 15 | ➜ | 1/SA/569:574 | NA | NA |
| 16 | ➜ | 1/SA/900:909 | NA | NA |
| 17 | ➜ | 1/SA/937:942 | NA | NA |
| 18 | ➜ | 1/SA/1055:1064 | NA | NA |
| 19 | ➜ | 1/SA/1501:1506 | NA | NA |
| 20 | ➜ | 1/SA/1594:1602 | NA | NA |
| 21 | ➜ | 1/SA/1802:1807 | NA | NA |
Problematic loops
Valid loops
| # | loop id | location | annotation | motif |
|---|---|---|---|---|
| 1 | ➜ | 1/3A/1:4,1/SA/1120:1123 | NA | NA |
| 2 | ➜ | 1/3A/4:6,1/SA/1118:1120 | NA | NA |
| 3 | ➜ | 1/3A/48:50,1/5A/468:470 | NA | NA |
| 4 | ➜ | 1/3A/50:52,1/5A/466:468 | NA | NA |
| 5 | ➜ | 1/3A/78:85,1/3A/325:329 | NA | NA |
| 6 | ➜ | 1/3A/97:98,1/3A/317:319 | NA | NA |
| 7 | ➜ | 1/5A/11:15,1/5A/66:71 | NA | NA |
| 8 | ➜ | 1/5A/16:18,1/5A/62:65 | NA | NA |
| 9 | ➜ | 1/5A/94:95,1/5A/149:156 | NA | NA |
| 10 | ➜ | 1/5A/97:99,1/5A/145:147 | NA | NA |
| 11 | ➜ | 1/5A/100:104,1/5A/140:144 | NA | NA |
| 12 | ➜ | 1/5A/107:111,1/5A/135:137 | NA | NA |
| 13 | ➜ | 1/5A/115:120,1/5A/125:131 | NA | NA |
| 14 | ➜ | 1/5A/167:172,1/5A/224:228 | NA | NA |
| 15 | ➜ | 1/5A/175:178,1/5A/219:221 | NA | NA |
| 16 | ➜ | 1/5A/181:183,1/5A/214:216 | NA | NA |
| 17 | ➜ | 1/5A/187:189,1/5A/208:210 | NA | NA |
| 18 | ➜ | 1/5A/246:247,1/5A/265:267 | NA | NA |
| 19 | ➜ | 1/5A/336:341,1/5A/384:387 | NA | NA |
| 20 | ➜ | 1/5A/342:343,1/5A/381:383 | NA | NA |
| 21 | ➜ | 1/5A/346:349,1/5A/375:378 | NA | NA |
| 22 | ➜ | 1/5A/352:356,1/5A/369:372 | NA | NA |
| 23 | ➜ | 1/5A/395:397,1/5A/460:462 | NA | NA |
| 24 | ➜ | 1/5A/400:406,1/5A/450:457 | NA | NA |
| 25 | ➜ | 1/5A/413:414,1/5A/440:443 | NA | NA |
| 26 | ➜ | 1/5A/501:503,1/5A/533:537 | NA | NA |
| 27 | ➜ | 1/5A/505:507,1/5A/529:531 | NA | NA |
| 28 | ➜ | 1/5A/513:515,1/5A/522:523 | NA | NA |
| 29 | ➜ | 1/5A/550:552,1/5A/585:587 | NA | NA |
| 30 | ➜ | 1/5A/555:558,1/5A/579:582 | NA | NA |
| 31 | ➜ | 1/5A/559:561,1/5A/576:578 | NA | NA |
| 32 | ➜ | 1/SA/24:26,1/SA/600:601 | NA | NA |
| 33 | ➜ | 1/SA/50:52,1/SA/428:429 | NA | NA |
| 34 | ➜ | 1/SA/109:112,1/SA/302:305 | NA | NA |
| 35 | ➜ | 1/SA/113:116,1/SA/300:301 | NA | NA |
| 36 | ➜ | 1/SA/117:122,1/SA/295:299 | NA | NA |
| 37 | ➜ | 1/SA/144:149,1/SA/165:171 | NA | NA |
| 38 | ➜ | 1/SA/150:152,1/SA/162:164 | NA | NA |
| 39 | ➜ | 1/SA/186:189,1/SA/196:199 | NA | NA |
| 40 | ➜ | 1/SA/204:206,1/SA/259:263 | NA | NA |
| 41 | ➜ | 1/SA/206:208,1/SA/257:259 | NA | NA |
| 42 | ➜ | 1/SA/265:267,1/SA/288:289 | NA | NA |
| 43 | ➜ | 1/SA/270:273,1/SA/283:285 | NA | NA |
| 44 | ➜ | 1/SA/275:276,1/SA/279:281 | NA | NA |
| 45 | ➜ | 1/SA/311:316,1/SA/348:355 | NA | NA |
| 46 | ➜ | 1/SA/318:323,1/SA/345:346 | NA | NA |
| 47 | ➜ | 1/SA/363:365,1/SA/376:381 | NA | NA |
| 48 | ➜ | 1/SA/389:391,1/SA/406:408 | NA | NA |
| 49 | ➜ | 1/SA/443:447,1/SA/460:461 | NA | NA |
| 50 | ➜ | 1/SA/447:448,1/SA/458:460 | NA | NA |
| 51 | ➜ | 1/SA/480:485,1/SA/502:508 | NA | NA |
| 52 | ➜ | 1/SA/517:520,1/SA/532:535 | NA | NA |
| 53 | ➜ | 1/SA/557:559,1/SA/586:587 | NA | NA |
| 54 | ➜ | 1/SA/627:631,1/SA/968:972 | NA | NA |
| 55 | ➜ | 1/SA/865:866,1/SA/962:965 | NA | NA |
| 56 | ➜ | 1/SA/867:870,1/SA/957:961 | NA | NA |
| 57 | ➜ | 1/SA/871:873,1/SA/954:956 | NA | NA |
| 58 | ➜ | 1/SA/874:878,1/SA/950:953 | NA | NA |
| 59 | ➜ | 1/SA/885:888,1/SA/924:927 | NA | NA |
| 60 | ➜ | 1/SA/893:899,1/SA/910:919 | NA | NA |
| 61 | ➜ | 1/SA/1041:1044,1/SA/1074:1077 | NA | NA |
| 62 | ➜ | 1/SA/1051:1053,1/SA/1066:1067 | NA | NA |
| 63 | ➜ | 1/SA/1149:1151,1/SA/1627:1628 | NA | NA |
| 64 | ➜ | 1/SA/1157:1161,1/SA/1616:1621 | NA | NA |
| 65 | ➜ | 1/SA/1173:1175,1/SA/1464:1466 | NA | NA |
| 66 | ➜ | 1/SA/1470:1474,1/SA/1533:1574 | NA | NA |
| 67 | ➜ | 1/SA/1495:1498,1/SA/1509:1512 | NA | NA |
| 68 | ➜ | 1/SA/1642:1644,1/SA/1757:1759 | NA | NA |
| 69 | ➜ | 1/SA/1644:1649,1/SA/1751:1757 | NA | NA |
| 70 | ➜ | 1/SA/1650:1652,1/SA/1748:1750 | NA | NA |
| 71 | ➜ | 1/SA/1653:1656,1/SA/1744:1747 | NA | NA |
| 72 | ➜ | 1/SA/1656:1658,1/SA/1743:1744 | NA | NA |
| 73 | ➜ | 1/SA/1665:1667,1/SA/1734:1736 | NA | NA |
| 74 | ➜ | 1/SA/1669:1672,1/SA/1729:1732 | NA | NA |
| 75 | ➜ | 1/SA/1672:1674,1/SA/1727:1729 | NA | NA |
| 76 | ➜ | 1/SA/1675:1678,1/SA/1723:1726 | NA | NA |
Problematic loops
No problematic loops
Coloring options: