6GZ5 Summary
- Structure Title
- 6GZ5 Summary
- Authors
- Release Date
- 2018-12-05
- Experimental technique
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
- Chains
-
- 7 RNA chains from Oryctolagus cuniculus, Saccharomyces cerevisiae, Salmonella virus SP6
- 79 other chains
- Compounds
- 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ribosomal protein uL2, ribosomal protein uL3, ribosomal protein uL4, ribosomal protein uL18, ribosomal protein eL6, ribosomal protein uL30, ribosomal protein eL8, ribosomal protein uL6, ribosomal protein uL16, ribosomal protein uL5, ribosomal protein uL10, ribosomal protein eL13, ribosomal protein eL14, ribosomal protein eL15, ribosomal protein uL13, ribosomal protein uL22, ribosomal protein eL18, ribosomal protein eL19, ribosomal protein eL20, ribosomal protein eL21, ribosomal protein eL22, ribosomal protein uL14, ribosomal protein eL24, ribosomal protein uL23, ribosomal protein uL24, ribosomal protein eL27, ribosomal protein uL15, ribosomal protein eL29, ribosomal protein eL30, ribosomal protein eL31, ribosomal protein eL32, ribosomal protein eL33, ribosomal protein eL34, ribosomal protein uL29, ribosomal protein eL36, ribosomal protein eL37, ribosomal protein eL38, ribosomal protein eL39, ribosomal protein eL40, ribosomal protein eL41, ribosomal protein eL42, ribosomal protein eL43, ribosomal protein uL11, ribosomal protein eL28, ribosomal protein uL1, 18S ribosomal RNA, ribosomal protein uS2, ribosomal protein eS1, ribosomal protein uS5, ribosomal protein uS3, ribosomal protein eS4, ribosomal protein uS7, ribosomal protein eS6, ribosomal protein eS7, ribosomal protein eS8, ribosomal protein uS4, ribosomal protein eS10, ribosomal protein uS17, ribosomal protein eS12, ribosomal protein uS15, ribosomal protein uS11, ribosomal protein uS19, ribosomal protein uS9, ribosomal protein eS17, ribosomal protein uS13, ribosomal protein eS19, ribosomal protein uS10, ribosomal protein eS21, ribosomal protein uS8, ribosomal protein uS12, ribosomal protein eS24, ribosomal protein eS25, ribosomal protein eS26, ribosomal protein eS27, ribosomal protein eS28, ribosomal protein uS14, ribosomal protein eS30, ribosomal protein eS31, ribosomal protein RACK 1, P/P-site-tRNA, E/E-site-tRNA, mRNA, eukaryotic elongation factor 2 (eEF2)
Pairwise Interactions
Interactions annotated by FR3D:- 1,989 base-pairs
- 5,355 base-stacking
- 2,336 base-phosphate
- 255 base-ribose
RNA 3D Motifs
In the current release of the RNA 3D Motif Atlas, 6GZ5 contains:- 264 internal loops from 0 motif groups
- 122 hairpin loops from 0 motif groups
- 29 three-way junctions
3D Redundancy
6GZ5 has chains which belong to the following equivalence classes in the current representative set:- NR_all_06650.36 (1)
- NR_all_83593.4 (1)
- NR_all_21280.32 (1)
- NR_all_68467.12 (1)
- NR_all_10255.36 (1)
- NR_4.0_06650.36 (1)
- NR_4.0_83593.4 (1)
- NR_4.0_21280.32 (1)
- NR_4.0_68467.12 (1)
- NR_4.0_10255.36 (1)
- NR_3.5_06650.36 (1)
- NR_3.5_83593.4 (1)
- NR_3.5_21280.32 (1)
- NR_3.5_68467.12 (1)
- NR_3.5_10255.36 (1)
- NR_20.0_06650.36 (1)
- NR_20.0_83593.4 (1)
- NR_20.0_21280.32 (1)
- NR_20.0_68467.12 (1)
- NR_20.0_10255.36 (1)
Similar structures
7O7Y 7O7Z 7OYD 8SCB 8RJB 7ZJW 8B6C 8RJD 9BDL 8BPO 7O80 8P2K 7OBR 8B5L 6SGC 7QWQ 7UCK 7TOR 8RJC 7QWR 7TOQ 7O81 7NWI 7ZJX 8BHF 6R5Q 9BDN 6P5I 6R6P 6P5J 6P5K 6ZVK 7MDZ 6P5N 7UCJ 7NFX 6D9J 7TM3 6T59 5LZS 7A01 5LZV 6MTD 8BTK 7QWS 6D90 6MTE 6MTC 5LZZ 5LZW 6GZ3 9BDP 6GZ4 5LZT 6MTB 7NWG 5LZX 6R6G 6HCJ 5LZU 7TUT 6FRK 6R7Q 6HCF 3JAH 7NWH 6FTI 5LZY 3JAG 3JAI 3J92 6FTJ 6HCQ 6HCM 4UJE 6FTG 3JAN 3JAJ 4UJD 4D67 4D5Y 4UJCStructures from NR_all_06650.36