Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_6GZ5_0011/A2/37:44No text annotation
Not in a motif group
homologous
HL_5TBW_001
HL_06192.2
HL_6GZ5_0021/A2/68:73No text annotation
Not in a motif group
homologous
HL_8C3A_002
HL_02862.2
HL_6GZ5_0031/A2/89:95No text annotation
Not in a motif group
homologous
HL_5TBW_003
HL_67216.7
HL_6GZ5_0041/A2/129:139No text annotation
Not in a motif group
HL_6GZ5_0051/A2/199:208No text annotation
Not in a motif group
geometric
HL_2ZZM_002
HL_23083.1
HL_6GZ5_0061/A2/218:222No text annotation
Not in a motif group
homologous
HL_5TBW_006
HL_98984.2
HL_6GZ5_0071/A2/283:292No text annotation
Not in a motif group
homologous
HL_8C3A_008
HL_71554.2
HL_6GZ5_0081/A2/308:317No text annotation
Not in a motif group
homologous
HL_8C3A_009
HL_12078.2
HL_6GZ5_0091/A2/362:367No text annotation
Not in a motif group
homologous
HL_8C3A_010
HL_42097.1
HL_6GZ5_0101/A2/387:392No text annotation
Not in a motif group
homologous
HL_8C3A_011
HL_42097.1
HL_6GZ5_0111/A2/517:630No text annotation
Not in a motif group
HL_6GZ5_0121/A2/750:891No text annotation
Not in a motif group
HL_6GZ5_0131/A2/1088:1147No text annotation
Not in a motif group
HL_6GZ5_0141/A2/1161:1166No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_6GZ5_0151/A2/1300:1309No text annotation
Not in a motif group
homologous
HL_8C3A_014
HL_89380.2
HL_6GZ5_0161/A2/1346:1357No text annotation
Not in a motif group
HL_6GZ5_0171/A2/1372:1377No text annotation
Not in a motif group
homologous
HL_8C3A_016
HL_42097.1
HL_6GZ5_0181/A2/1388:1395No text annotation
Not in a motif group
HL_6GZ5_0191/A2/1417:1432No text annotation
Not in a motif group
HL_6GZ5_0201/A2/1461:1468No text annotation
Not in a motif group
geometric
HL_6VMY_004
HL_91058.1
HL_6GZ5_0211/A2/1543:1548No text annotation
Not in a motif group
homologous
HL_8C3A_019
HL_42097.1
HL_6GZ5_0221/A2/1575:1584No text annotation
Not in a motif group
homologous
HL_8C3A_020
HL_39334.6
HL_6GZ5_0231/A2/1609:1617No text annotation
Not in a motif group
homologous
HL_5TBW_021
HL_33817.1
HL_6GZ5_0241/A2/1657:1662No text annotation
Not in a motif group
homologous
HL_8C3A_022
HL_96598.1
HL_6GZ5_0251/A2/1745:1751GNRA
Not in a motif group
homologous
HL_5TBW_023
HL_42097.1
HL_6GZ5_0261/A2/1798:1805No text annotation
Not in a motif group
homologous
HL_5TBW_024
HL_71554.2
HL_6GZ5_0271/A2/1845:1851No text annotation
Not in a motif group
homologous
HL_8C3A_025
HL_42097.1
HL_6GZ5_0281/A2/1867:1874No text annotation
Not in a motif group
homologous
HL_8C3A_026
HL_64430.2
HL_6GZ5_0291/A2/1959:1969No text annotation
Not in a motif group
homologous
HL_5TBW_027
HL_07145.1
HL_6GZ5_0301/A2/1987:1994No text annotation
Not in a motif group
homologous
HL_8C3A_028
HL_84085.2
HL_6GZ5_0311/A2/2066:2250No text annotation
Not in a motif group
HL_6GZ5_0321/A2/2296:2301No text annotation
Not in a motif group
homologous
HL_8C3A_030
HL_42097.1
HL_6GZ5_0331/A2/2355:2363No text annotation
Not in a motif group
homologous
HL_8C3A_031
HL_89380.2
HL_6GZ5_0341/A2/2399:2405No text annotation
Not in a motif group
homologous
HL_8C3A_032
HL_46680.1
HL_6GZ5_0351/A2/2437:2442No text annotation
Not in a motif group
homologous
HL_8C3A_033
HL_76539.2
HL_6GZ5_0361/A2/2466:2470No text annotation
Not in a motif group
HL_6GZ5_0371/A2/2502:2511No text annotation
Not in a motif group
homologous
HL_5TBW_035
HL_69023.2
HL_6GZ5_0381/A2/2540:2545No text annotation
Not in a motif group
geometric
HL_7A0S_070
HL_42097.1
HL_6GZ5_0391/A2/2557:2562No text annotation
Not in a motif group
homologous
HL_8C3A_036
HL_42097.1
HL_6GZ5_0401/A2/2603:2611No text annotation
Not in a motif group
homologous
HL_8C3A_037
HL_60812.1
HL_6GZ5_0411/A2/2643:2649No text annotation
Not in a motif group
homologous
HL_8C3A_038
HL_86373.2
HL_6GZ5_0421/A2/2683:2691No text annotation
Not in a motif group
HL_6GZ5_0431/A2/2717:2721No text annotation
Not in a motif group
homologous
HL_8C3A_040
HL_49678.1
HL_6GZ5_0441/A2/2771:2778No text annotation
Not in a motif group
homologous
HL_8C3A_041
HL_64430.2
HL_6GZ5_0451/A2/2789:2795No text annotation
Not in a motif group
homologous
HL_8C3A_042
HL_42097.1
HL_6GZ5_0461/A2/2851:2856No text annotation
Not in a motif group
homologous
HL_8C3A_043
HL_03562.2
HL_6GZ5_0471/A2/2880:3569No text annotation
Not in a motif group
HL_6GZ5_0481/A2/3585:3589No text annotation
Not in a motif group
homologous
HL_8C3A_045
HL_20062.1
HL_6GZ5_0491/A2/3610:3620No text annotation
Not in a motif group
homologous
HL_8C3A_046
HL_43613.5
HL_6GZ5_0501/A2/3639:3645No text annotation
Not in a motif group
homologous
HL_8C3A_047
HL_42097.1
HL_6GZ5_0511/A2/3695:3700No text annotation
Not in a motif group
homologous
HL_8C3A_048
HL_42097.1
HL_6GZ5_0521/A2/3728:3738No text annotation
Not in a motif group
homologous
HL_8C3A_049
HL_71924.2
HL_6GZ5_0531/A2/3767:3775No text annotation
Not in a motif group
homologous
HL_8C3A_050
HL_51824.1
HL_6GZ5_0541/A2/3844:3853No text annotation
Not in a motif group
homologous
HL_8C3A_051
HL_90642.6
HL_6GZ5_0551/A2/4072:4076No text annotation
Not in a motif group
geometric
HL_4YAZ_004
HL_56691.2
HL_6GZ5_0561/A2/4104:4111No text annotation
Not in a motif group
geometric
HL_5TBW_018
HL_34168.2
HL_6GZ5_0571/A2/4155:4163No text annotation
Not in a motif group
homologous
HL_8C3A_055
HL_53171.2
HL_6GZ5_0581/A2/4172:4184No text annotation
Not in a motif group
homologous
HL_8C3A_056
HL_19870.6
HL_6GZ5_0591/A2/4212:4220No text annotation
Not in a motif group
homologous
HL_8C3A_057
HL_76406.4
HL_6GZ5_0601/A2/4232:4239No text annotation
Not in a motif group
homologous
HL_8C3A_058
HL_12078.2
HL_6GZ5_0611/A2/4263:4271No text annotation
Not in a motif group
homologous
HL_8C3A_059
HL_92229.2
HL_6GZ5_0621/A2/4283:4288No text annotation
Not in a motif group
homologous
HL_8C3A_060
HL_42097.1
HL_6GZ5_0631/A2/4314:4324No text annotation
Not in a motif group
geometric
HL_4V83_139
HL_53597.2
HL_6GZ5_0641/A2/4379:4387No text annotation
Not in a motif group
homologous
HL_5TBW_061
HL_06192.2
HL_6GZ5_0651/A2/4436:4443No text annotation
Not in a motif group
homologous
HL_5TBW_062
HL_88526.2
HL_6GZ5_0661/A2/4459:4465No text annotation
Not in a motif group
geometric
HL_5TBW_063
HL_43656.2
HL_6GZ5_0671/A2/4502:4507GNRA
Not in a motif group
homologous
HL_5TBW_064
HL_42097.1
HL_6GZ5_0681/A2/4565:4570GNRA
Not in a motif group
geometric
HL_4V9F_020
HL_42097.1
HL_6GZ5_0691/A2/4608:4613No text annotation
Not in a motif group
homologous
HL_8C3A_067
HL_46680.1
HL_6GZ5_0701/A2/4650:4664No text annotation
Not in a motif group
homologous
HL_8C3A_068
HL_56677.7
HL_6GZ5_0711/A2/4865:4872No text annotation
Not in a motif group
HL_6GZ5_0721/A2/4933:4941No text annotation
Not in a motif group
homologous
HL_5TBW_070
HL_27930.1
HL_6GZ5_0731/A2/4979:4986No text annotation
Not in a motif group
HL_6GZ5_0741/A3/47:56No text annotation
Not in a motif group
geometric
HL_7RQB_001
HL_99167.1
HL_6GZ5_0751/A3/68:90No text annotation
Not in a motif group
HL_6GZ5_0761/A3/107:112No text annotation
Not in a motif group
HL_6GZ5_0771/A3/120:130No text annotation
Not in a motif group
HL_6GZ5_0781/A4/36:41No text annotation
Not in a motif group
homologous
HL_5TBW_185
HL_87939.1
HL_6GZ5_0791/A4/86:91GNRA
Not in a motif group
homologous
HL_5TBW_186
HL_42097.1
HL_6GZ5_0801/B1/7:17No text annotation
Not in a motif group
homologous
HL_4V88_186
HL_89881.2
HL_6GZ5_0811/B1/69:80No text annotation
Not in a motif group
geometric
HL_361D_002
HL_90617.2
HL_6GZ5_0821/B1/155:163No text annotation
Not in a motif group
HL_6GZ5_0831/B1/197:202GNRA
Not in a motif group
geometric
HL_6CZR_081
HL_42097.1
HL_6GZ5_0841/B1/239:282No text annotation
Not in a motif group
HL_6GZ5_0851/B1/288:295T-loop with 1 bulged base
Not in a motif group
homologous
HL_4V88_191
HL_27930.1
HL_6GZ5_0861/B1/322:329T-loop with 1 bulged base
Not in a motif group
geometric
HL_5TBW_005
HL_89380.2
HL_6GZ5_0871/B1/377:387No text annotation
Not in a motif group
HL_6GZ5_0881/B1/416:421No text annotation
Not in a motif group
homologous
HL_4V88_194
HL_50142.2
HL_6GZ5_0891/B1/441:452No text annotation
Not in a motif group
homologous
HL_4V88_195
HL_84288.1
HL_6GZ5_0901/B1/462:467UNCG
Not in a motif group
homologous
HL_4V88_196
HL_03562.2
HL_6GZ5_0911/B1/498:504No text annotation
Not in a motif group
geometric
HL_5NFV_001
HL_76539.2
HL_6GZ5_0921/B1/539:544No text annotation
Not in a motif group
geometric
HL_2Y8W_001
HL_01057.1
HL_6GZ5_0931/B1/569:581No text annotation
Not in a motif group
geometric
HL_4V88_199
HL_06285.2
HL_6GZ5_0941/B1/618:623Other HL
Not in a motif group
homologous
HL_4V88_200
HL_53845.1
HL_6GZ5_0951/B1/692:738No text annotation
Not in a motif group
HL_6GZ5_0961/B1/751:792No text annotation
Not in a motif group
HL_6GZ5_0971/B1/820:828No text annotation
Not in a motif group
homologous
HL_4V88_203
HL_46766.2
HL_6GZ5_0981/B1/833:841No text annotation
Not in a motif group
HL_6GZ5_0991/B1/885:901No text annotation
Not in a motif group
homologous
HL_4V88_205
HL_96598.1
HL_6GZ5_1001/B1/957:966No text annotation
Not in a motif group
homologous
HL_4V88_206
HL_12326.1
HL_6GZ5_1011/B1/994:999Other HL
Not in a motif group
homologous
HL_4V88_207
HL_87030.2
HL_6GZ5_1021/B1/1054:1064No text annotation
Not in a motif group
homologous
HL_4V88_208
HL_12326.1
HL_6GZ5_1031/B1/1112:1121No text annotation
Not in a motif group
HL_6GZ5_1041/B1/1141:1146Other HL
Not in a motif group
homologous
HL_4V88_210
HL_42097.1
HL_6GZ5_1051/B1/1178:1183GNRA
Not in a motif group
homologous
HL_4V88_211
HL_42097.1
HL_6GZ5_1061/B1/1245:1254No text annotation
Not in a motif group
homologous
HL_4V88_212
HL_73530.2
HL_6GZ5_1071/B1/1295:1304No text annotation
Not in a motif group
homologous
HL_4V88_213
HL_53597.2
HL_6GZ5_1081/B1/1353:1358GNRA
Not in a motif group
homologous
HL_4V88_214
HL_42097.1
HL_6GZ5_1091/B1/1366:1373No text annotation
Not in a motif group
homologous
HL_4V88_215
HL_71554.2
HL_6GZ5_1101/B1/1415:1422No text annotation
Not in a motif group
geometric
HL_2Y9H_005
HL_47100.1
HL_6GZ5_1111/B1/1460:1466No text annotation
Not in a motif group
geometric
HL_5U3G_001
HL_87030.2
HL_6GZ5_1121/B1/1565:1570GNRA
Not in a motif group
homologous
HL_4V88_218
HL_42097.1
HL_6GZ5_1131/B1/1614:1625No text annotation
Not in a motif group
homologous
HL_4V88_219
HL_22554.1
HL_6GZ5_1141/B1/1658:1666No text annotation
Not in a motif group
homologous
HL_4V88_220
HL_60812.1
HL_6GZ5_1151/B1/1756:1776No text annotation
Not in a motif group
HL_6GZ5_1161/B1/1847:1852Other HL
Not in a motif group
homologous
HL_4V88_222
HL_16173.1
HL_6GZ5_1171/Bv/12:23No text annotation
Not in a motif group
HL_6GZ5_1181/Bv/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_4V90_033
HL_53597.2
HL_6GZ5_1191/Bv/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_5HR6_003
HL_22280.1
HL_6GZ5_1201/Bw/13:22No text annotation
Not in a motif group
homologous
HL_6PMO_003
NA
HL_6GZ5_1211/Bw/31:39tRNA anticodon loop
Not in a motif group
homologous
HL_2AKE_002
HL_53597.2
HL_6GZ5_1221/Bw/53:61T-loop with 2 stacked bulged bases
Not in a motif group
homologous
HL_3WFS_003
HL_71309.1

Problematic loops

No problematic loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_6GZ5_0011/A2/6:7,
1/A3/149:151
No text annotation
Not in a motif group
homologous
IL_8C3A_002
IL_61258.12
IL_6GZ5_0021/A2/11:14,
1/A3/143:145
No text annotation
Not in a motif group
geometric
IL_5TBW_378
IL_95997.1
IL_6GZ5_0031/A2/16:18,
1/A3/139:141
No text annotation
Not in a motif group
geometric
IL_5C5W_002
IL_95997.1
IL_6GZ5_0041/A2/26:27,
1/A2/55:57
No text annotation
Not in a motif group
homologous
IL_8C3A_004
IL_76488.2
IL_6GZ5_0051/A2/30:37,
1/A2/44:52
9x8 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_4WF9_008
IL_35728.2
IL_6GZ5_0061/A2/81:88,
1/A2/96:102
No text annotation
Not in a motif group
homologous
IL_8C3A_006
IL_88613.1
IL_6GZ5_0071/A2/118:124,
1/A2/143:151
No text annotation
Not in a motif group
IL_6GZ5_0081/A2/127:129,
1/A2/139:140
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_76488.2
IL_6GZ5_0091/A2/158:160,
1/A2/267:269
UG cWW
Not in a motif group
geometric
IL_4LFB_061
IL_95997.1
IL_6GZ5_0101/A2/161:164,
1/A2/263:266
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_4WF9_109
IL_30621.2
IL_6GZ5_0111/A2/165:167,
1/A2/261:262
Single stack bend
Not in a motif group
geometric
IL_4LFB_041
IL_76488.2
IL_6GZ5_0121/A2/167:173,
1/A2/256:261
No text annotation
Not in a motif group
IL_6GZ5_0131/A2/173:175,
1/A2/253:256
No text annotation
Not in a motif group
IL_6GZ5_0141/A2/175:180,
1/A2/251:253
No text annotation
Not in a motif group
IL_6GZ5_0151/A2/180:185,
1/A2/248:251
No text annotation
Not in a motif group
IL_6GZ5_0161/A2/186:188,
1/A2/246:247
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_6GZ5_0171/A2/189:191,
1/A2/243:245
No text annotation
Not in a motif group
IL_6GZ5_0181/A2/198:199,
1/A2/208:210
Single stack bend
Not in a motif group
geometric
IL_7RQB_058
IL_76488.2
IL_6GZ5_0191/A2/342:344,
1/A3/25:26
No text annotation
Not in a motif group
homologous
IL_8C3A_014
IL_37497.2
IL_6GZ5_0201/A2/381:384,
1/A2/395:408
No text annotation
Not in a motif group
homologous
IL_5TBW_014
IL_60992.6
IL_6GZ5_0211/A2/409:415,
1/A3/13:19
No text annotation
Not in a motif group
homologous
IL_8C3A_016
IL_66414.6
IL_6GZ5_0221/A2/437:440,
1/A2/1283:1287
No text annotation
Not in a motif group
geometric
IL_6AZ4_001
IL_69145.1
IL_6GZ5_0231/A2/454:456,
1/A2/686:688
No text annotation
Not in a motif group
geometric
IL_5TBW_027
IL_95997.1
IL_6GZ5_0241/A2/456:460,
1/A2/682:686
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05145.2
IL_6GZ5_0251/A2/461:468,
1/A2/675:681
No text annotation
Not in a motif group
IL_6GZ5_0261/A2/468:470,
1/A2/671:675
No text annotation
Not in a motif group
IL_6GZ5_0271/A2/470:472,
1/A2/670:671
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_6GZ5_0281/A2/472:475,
1/A2/667:670
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_6CZR_168
IL_67743.1
IL_6GZ5_0291/A2/475:481,
1/A2/663:667
No text annotation
Not in a motif group
IL_6GZ5_0301/A2/481:484,
1/A2/658:663
No text annotation
Not in a motif group
IL_6GZ5_0311/A2/484:485,
1/A2/656:658
Single stack bend
Not in a motif group
geometric
IL_5J7L_044
IL_76488.2
IL_6GZ5_0321/A2/486:489,
1/A2/653:655
No text annotation
Not in a motif group
IL_6GZ5_0331/A2/489:490,
1/A2/651:653
Single stack bend
Not in a motif group
geometric
IL_4V9F_081
IL_76488.2
IL_6GZ5_0341/A2/491:493,
1/A2/649:650
No text annotation
Not in a motif group
IL_6GZ5_0351/A2/493:498,
1/A2/648:649
Single stack bend
Not in a motif group
geometric
IL_4WF9_089
IL_76488.2
IL_6GZ5_0361/A2/502:504,
1/A2/643:644
Single bulged A
Not in a motif group
geometric
IL_2VPL_002
IL_37497.2
IL_6GZ5_0371/A2/506:509,
1/A2/640:641
Multiple bulged bases
Not in a motif group
geometric
IL_4LFB_007
IL_16396.2
IL_6GZ5_0381/A2/514:515,
1/A2/632:635
Single stack bend
Not in a motif group
geometric
IL_4LFB_041
IL_76488.2
IL_6GZ5_0391/A2/699:700,
1/A2/1270:1272
Single bulged G
Not in a motif group
geometric
IL_4LFB_036
IL_00225.2
IL_6GZ5_0401/A2/713:715,
1/A2/929:933
No text annotation
Not in a motif group
IL_6GZ5_0411/A2/717:726,
1/A2/915:927
No text annotation
Not in a motif group
IL_6GZ5_0421/A2/727:729,
1/A2/913:914
Other IL
Not in a motif group
geometric
IL_3WBM_004
IL_76223.2
IL_6GZ5_0431/A2/731:733,
1/A2/909:911
No text annotation
Not in a motif group
geometric
IL_4YHW_001
IL_95997.1
IL_6GZ5_0441/A2/734:736,
1/A2/907:908
Single stack bend
Not in a motif group
geometric
IL_4LFB_041
IL_76488.2
IL_6GZ5_0451/A2/736:744,
1/A2/897:907
No text annotation
Not in a motif group
IL_6GZ5_0461/A2/1059:1063,
1/A2/1202:1218
No text annotation
Not in a motif group
IL_6GZ5_0471/A2/1065:1068,
1/A2/1194:1200
No text annotation
Not in a motif group
IL_6GZ5_0481/A2/1068:1072,
1/A2/1189:1194
No text annotation
Not in a motif group
geometric
IL_5TBW_121
IL_05145.2
IL_6GZ5_0491/A2/1072:1074,
1/A2/1188:1189
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_6GZ5_0501/A2/1078:1079,
1/A2/1182:1184
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_6GZ5_0511/A2/1156:1158,
1/A2/1169:1171
Isolated cWH basepair
Not in a motif group
geometric
IL_3W3S_003
IL_51629.2
IL_6GZ5_0521/A2/1340:1343,
1/A2/1362:1365
No text annotation
Not in a motif group
IL_6GZ5_0531/A2/1343:1344,
1/A2/1359:1362
Major groove outside cWW, minor groove, intercalation pocket
Not in a motif group
geometric
IL_1U9S_003
IL_69996.1
IL_6GZ5_0541/A2/1408:1412,
1/A2/1437:1442
Triple sheared related
Not in a motif group
geometric
IL_4V9F_018
IL_64879.2
IL_6GZ5_0551/A2/1413:1417,
1/A2/1432:1436
Triple sheared
Not in a motif group
geometric
IL_5J7L_274
IL_56467.8
IL_6GZ5_0561/A2/1449:1450,
1/A2/1478:1480
No text annotation
Not in a motif group
homologous
IL_8C3A_026
IL_37497.2
IL_6GZ5_0571/A2/1456:1458,
1/A2/1471:1472
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_76488.2
IL_6GZ5_0581/A2/1502:1504,
1/A2/1637:1639
No text annotation
Not in a motif group
homologous
IL_8C3A_029
IL_95997.1
IL_6GZ5_0591/A2/1504:1508,
1/A2/1630:1637
No text annotation
Not in a motif group
homologous
IL_8C3A_030
IL_17470.6
IL_6GZ5_0601/A2/1532:1533,
1/A2/1558:1560
Single bulged G
Not in a motif group
geometric
IL_4V9F_026
IL_00225.2
IL_6GZ5_0611/A2/1533:1537,
1/A2/1554:1558
No text annotation
Not in a motif group
homologous
IL_8C3A_033
IL_56467.8
IL_6GZ5_0621/A2/1568:1571,
1/A2/1587:1589
No text annotation
Not in a motif group
homologous
IL_8C3A_034
IL_05564.2
IL_6GZ5_0631/A2/1572:1574,
1/A2/1585:1586
No text annotation
Not in a motif group
homologous
IL_8C3A_035
IL_83039.13
IL_6GZ5_0641/A2/1606:1608,
1/A2/1618:1622
No text annotation
Not in a motif group
homologous
IL_8C3A_036
IL_90991.6
IL_6GZ5_0651/A2/1653:1655,
1/A2/1664:1666
No text annotation
Not in a motif group
homologous
IL_8C3A_037
IL_95997.1
IL_6GZ5_0661/A2/1668:1670,
1/A2/1829:1832
No text annotation
Not in a motif group
IL_6GZ5_0671/A2/1676:1703,
1/A2/1822:1823
No text annotation
Not in a motif group
IL_6GZ5_0681/A2/1705:1707,
1/A2/1819:1820
No text annotation
Not in a motif group
homologous
IL_8C3A_040
IL_00225.2
IL_6GZ5_0691/A2/1714:1719,
1/A2/1774:1779
5x5 Sarcin-Ricin with intercalated A; G-bulge
Not in a motif group
geometric
IL_7A0S_027
IL_81631.1
IL_6GZ5_0701/A2/1719:1720,
1/A2/1772:1774
Minor groove platform
Not in a motif group
geometric
IL_6DLR_003
IL_42622.2
IL_6GZ5_0711/A2/1721:1726,
1/A2/1768:1771
No text annotation
Not in a motif group
homologous
IL_8C3A_043
IL_02509.1
IL_6GZ5_0721/A2/1728:1731,
1/A2/1763:1766
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_041
IL_30621.2
IL_6GZ5_0731/A2/1731:1733,
1/A2/1761:1763
No text annotation
Not in a motif group
geometric
IL_5TBW_042
IL_95997.1
IL_6GZ5_0741/A2/1735:1738,
1/A2/1757:1759
No text annotation
Not in a motif group
geometric
IL_6CZR_136
IL_05564.2
IL_6GZ5_0751/A2/1738:1740,
1/A2/1756:1757
Single stack bend
Not in a motif group
geometric
IL_4V83_236
IL_76488.2
IL_6GZ5_0761/A2/1742:1745,
1/A2/1751:1754
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_1MFQ_004
IL_30621.2
IL_6GZ5_0771/A2/1796:1798,
1/A2/1805:1806
Single bulged G
Not in a motif group
geometric
IL_4V88_442
IL_00225.2
IL_6GZ5_0781/A2/1839:1841,
1/A2/1855:1857
No text annotation
Not in a motif group
homologous
IL_5TBW_046
IL_95997.1
IL_6GZ5_0791/A2/1886:1890,
1/A2/2048:2052
No text annotation
Not in a motif group
homologous
IL_8C3A_051
IL_89002.2
IL_6GZ5_0801/A2/1892:1899,
1/A2/2045:2046
SSU/LSU pseudoknot
Not in a motif group
geometric
IL_4WF9_037
IL_15861.7
IL_6GZ5_0811/A2/1899:1901,
1/A2/2044:2045
No text annotation
Not in a motif group
IL_6GZ5_0821/A2/1901:1903,
1/A2/2043:2044
No text annotation
Not in a motif group
IL_6GZ5_0831/A2/1907:1914,
1/A2/2034:2039
No text annotation
Not in a motif group
homologous
IL_8C3A_054
IL_27086.1
IL_6GZ5_0841/A2/1914:1925,
1/A2/2019:2034
No text annotation
Not in a motif group
geometric
IL_5TBW_052
IL_53762.1
IL_6GZ5_0851/A2/1927:1929,
1/A2/2016:2017
Single bulged U
Not in a motif group
homologous
IL_5TBW_053
IL_83039.13
IL_6GZ5_0861/A2/1938:1946,
1/A2/2003:2007
No text annotation
Not in a motif group
IL_6GZ5_0871/A2/1954:1959,
1/A2/1969:1974
No text annotation
Not in a motif group
IL_6GZ5_0881/A2/1982:1986,
1/A2/1995:1997
No text annotation
Not in a motif group
homologous
IL_8C3A_059
IL_05564.2
IL_6GZ5_0891/A2/2064:2066,
1/A2/2250:2252
No text annotation
Not in a motif group
geometric
IL_3ICQ_003
IL_51629.2
IL_6GZ5_0901/A2/2269:2271,
1/A2/2321:2324
No text annotation
Not in a motif group
homologous
IL_8C3A_061
IL_52767.2
IL_6GZ5_0911/A2/2278:2280,
1/A2/2313:2314
Single bulged A
Not in a motif group
geometric
IL_3OXE_001
IL_37497.2
IL_6GZ5_0921/A2/2280:2282,
1/A2/2312:2313
Single stack bend
Not in a motif group
geometric
IL_7RQB_005
IL_76488.2
IL_6GZ5_0931/A2/2282:2288,
1/A2/2308:2312
No text annotation
Not in a motif group
IL_6GZ5_0941/A2/2291:2293,
1/A2/2304:2305
Single bulged A
Not in a motif group
geometric
IL_5WWT_001
IL_37497.2
IL_6GZ5_0951/A2/2337:2343,
1/A2/3829:3834
No text annotation
Not in a motif group
homologous
IL_8C3A_065
IL_76042.2
IL_6GZ5_0961/A2/2385:2388,
1/A2/2762:2763
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7A0S_046
IL_50694.2
IL_6GZ5_0971/A2/2394:2399,
1/A2/2405:2408
No text annotation
Not in a motif group
IL_6GZ5_0981/A2/2425:2429,
1/A2/2488:2493
No text annotation
Not in a motif group
homologous
IL_8C3A_067
IL_89002.2
IL_6GZ5_0991/A2/2455:2458,
1/A2/2478:2480
No text annotation
Not in a motif group
geometric
IL_4V9F_053
IL_46796.1
IL_6GZ5_1001/A2/2521:2526,
1/A2/2751:2753
Isolated non-canonical cWW with bulges
Not in a motif group
geometric
IL_4RUM_001
IL_82068.2
IL_6GZ5_1011/A2/2528:2529,
1/A2/2747:2749
Single bulged U
Not in a motif group
geometric
IL_2R8S_004
IL_83039.13
IL_6GZ5_1021/A2/2568:2572,
1/A2/2731:2735
Triple sheared
Not in a motif group
geometric
IL_5TBW_067
IL_56467.8
IL_6GZ5_1031/A2/2592:2593,
1/A2/2703:2705
Single bulged C
Not in a motif group
homologous
IL_5TBW_069
IL_61258.12
IL_6GZ5_1041/A2/2593:2594,
1/A2/2701:2703
Single stack bend
Not in a motif group
geometric
IL_7A0S_005
IL_76488.2
IL_6GZ5_1051/A2/2625:2627,
1/A2/2664:2667
Decoding loop related
Not in a motif group
geometric
IL_2O3X_003
IL_82842.2
IL_6GZ5_1061/A2/2630:2633,
1/A2/2659:2661
Isolated cWH basepair
Not in a motif group
geometric
IL_406D_002
IL_51629.2
IL_6GZ5_1071/A2/2635:2641,
1/A2/2651:2657
Kink-turn
Not in a motif group
homologous
IL_5TBW_073
IL_60192.2
IL_6GZ5_1081/A2/2811:2817,
1/A2/3821:3824
No text annotation
Not in a motif group
homologous
IL_8C3A_080
IL_49460.2
IL_6GZ5_1091/A2/2823:2825,
1/A2/3813:3815
No text annotation
Not in a motif group
homologous
IL_8C3A_081
IL_54997.7
IL_6GZ5_1101/A2/2826:2829,
1/A2/3811:3812
Major groove platform; stack outside cWW
Not in a motif group
geometric
IL_7RQB_066
IL_50694.2
IL_6GZ5_1111/A2/2829:2834,
1/A2/3808:3811
No text annotation
Not in a motif group
homologous
IL_8C3A_083
IL_82842.2
IL_6GZ5_1121/A2/2846:2851,
1/A2/2856:2862
tSH-tSH-tHH-tHS
Not in a motif group
geometric
IL_4V9F_063
IL_65969.2
IL_6GZ5_1131/A2/2868:2870,
1/A2/3581:3583
No text annotation
Not in a motif group
homologous
IL_8C3A_085
IL_95997.1
IL_6GZ5_1141/A2/2875:2876,
1/A2/3573:3576
No text annotation
Not in a motif group
homologous
IL_8C3A_086
IL_74125.1
IL_6GZ5_1151/A2/3603:3604,
1/A2/3798:3800
No text annotation
Not in a motif group
homologous
IL_8C3A_087
IL_37497.2
IL_6GZ5_1161/A2/3631:3636,
1/A2/3648:3655
No text annotation
Not in a motif group
homologous
IL_8C3A_088
IL_64509.1
IL_6GZ5_1171/A2/3671:3674,
1/A2/3720:3721
No text annotation
Not in a motif group
homologous
IL_8C3A_089
IL_88739.1
IL_6GZ5_1181/A2/3675:3676,
1/A2/3716:3719
No text annotation
Not in a motif group
homologous
IL_8C3A_090
IL_16396.2
IL_6GZ5_1191/A2/3679:3685,
1/A2/3710:3713
No text annotation
Not in a motif group
IL_6GZ5_1201/A2/3686:3692,
1/A2/3703:3709
No text annotation
Not in a motif group
homologous
IL_8C3A_093
IL_36973.6
IL_6GZ5_1211/A2/3725:3726,
1/A2/3740:3742
Single stack bend
Not in a motif group
geometric
IL_4WF9_007
IL_76488.2
IL_6GZ5_1221/A2/3751:3752,
1/A2/3782:3785
No text annotation
Not in a motif group
homologous
IL_8C3A_094
IL_59677.2
IL_6GZ5_1231/A2/3752:3763,
1/A2/3779:3782
No text annotation
Not in a motif group
geometric
IL_5TBW_090
IL_81589.2
IL_6GZ5_1241/A2/3866:3869,
1/A2/4525:4527
No text annotation
Not in a motif group
homologous
IL_8C3A_096
IL_63450.2
IL_6GZ5_1251/A2/3871:3873,
1/A2/4520:4523
No text annotation
Not in a motif group
homologous
IL_8C3A_097
IL_54678.5
IL_6GZ5_1261/A2/3884:3886,
1/A2/4350:4351
No text annotation
Not in a motif group
homologous
IL_8C3A_098
IL_83039.13
IL_6GZ5_1271/A2/3887:3888,
1/A2/4346:4349
Minor groove platform
Not in a motif group
homologous
IL_5TBW_094
IL_42622.2
IL_6GZ5_1281/A2/3898:3900,
1/A2/4143:4146
No text annotation
Not in a motif group
homologous
IL_8C3A_100
IL_38958.7
IL_6GZ5_1291/A2/3919:3920,
1/A2/4033:4035
Minor groove platform
Not in a motif group
geometric
IL_4R4V_001
IL_69996.1
IL_6GZ5_1301/A2/3921:3923,
1/A2/4030:4032
No text annotation
Not in a motif group
geometric
IL_7A0S_026
IL_51629.2
IL_6GZ5_1311/A2/3925:3937,
1/A2/4025:4028
No text annotation
Not in a motif group
IL_6GZ5_1321/A2/3941:3944,
1/A2/4008:4021
No text annotation
Not in a motif group
geometric
IL_3U4M_003
IL_75283.2
IL_6GZ5_1331/A2/4052:4058,
1/A2/4123:4126
No text annotation
Not in a motif group
homologous
IL_8C3A_106
IL_74114.1
IL_6GZ5_1341/A2/4068:4069,
1/A2/4080:4082
No text annotation
Not in a motif group
IL_6GZ5_1351/A2/4069:4071,
1/A2/4077:4080
Decoding loop related
Not in a motif group
geometric
IL_3C3Z_002
IL_64417.1
IL_6GZ5_1361/A2/4153:4154,
1/A2/4164:4166
Single bulged A
Not in a motif group
homologous
IL_5TBW_098
IL_37497.2
IL_6GZ5_1371/A2/4205:4207,
1/A2/4225:4229
Isolated tHS basepair with bulges
Not in a motif group
geometric
IL_5TBW_099
IL_38958.7
IL_6GZ5_1381/A2/4257:4260,
1/A2/4274:4277
Tandem non-canonical cWW pairs
Not in a motif group
homologous
IL_5TBW_100
IL_30621.2
IL_6GZ5_1391/A2/4309:4312,
1/A2/4326:4327
Single stack bend
Not in a motif group
geometric
IL_5J7L_032
IL_76488.2
IL_6GZ5_1401/A2/4362:4363,
1/A2/4404:4406
Major groove platform
Not in a motif group
homologous
IL_5TBW_102
IL_27635.1
IL_6GZ5_1411/A2/4363:4365,
1/A2/4402:4404
No text annotation
Not in a motif group
geometric
IL_5TBW_103
IL_95997.1
IL_6GZ5_1421/A2/4365:4367,
1/A2/4401:4402
Major groove platform
Not in a motif group
geometric
IL_5TBW_104
IL_76223.2
IL_6GZ5_1431/A2/4367:4369,
1/A2/4397:4401
No text annotation
Not in a motif group
geometric
IL_5TBW_105
IL_92788.2
IL_6GZ5_1441/A2/4374:4378,
1/A2/4388:4392
No text annotation
Not in a motif group
homologous
IL_8C3A_114
NA
IL_6GZ5_1451/A2/4415:4416,
1/A2/4488:4490
Major groove platform
Not in a motif group
homologous
IL_5TBW_107
IL_76223.2
IL_6GZ5_1461/A2/4418:4420,
1/A2/4482:4486
No text annotation
Not in a motif group
homologous
IL_8C3A_116
IL_90933.2
IL_6GZ5_1471/A2/4420:4421,
1/A2/4479:4482
Multiple bulged bases
Not in a motif group
geometric
IL_5TBW_109
IL_71530.2
IL_6GZ5_1481/A2/4428:4430,
1/A2/4451:4453
No text annotation
Not in a motif group
geometric
IL_4KR9_001
IL_51629.2
IL_6GZ5_1491/A2/4430:4432,
1/A2/4447:4451
No text annotation
Not in a motif group
IL_6GZ5_1501/A2/4457:4459,
1/A2/4465:4467
No text annotation
Not in a motif group
homologous
IL_8C3A_120
IL_95997.1
IL_6GZ5_1511/A2/4499:4500,
1/A2/4509:4511
Single bulged A
Not in a motif group
geometric
IL_7RQB_101
IL_37497.2
IL_6GZ5_1521/A2/4542:4547,
1/A2/4679:4685
No text annotation
Not in a motif group
IL_6GZ5_1531/A2/4552:4554,
1/A2/4580:4582
No text annotation
Not in a motif group
homologous
IL_8C3A_124
IL_95997.1
IL_6GZ5_1541/A2/4558:4565,
1/A2/4570:4576
No text annotation
Not in a motif group
homologous
IL_8C3A_125
IL_04346.7
IL_6GZ5_1551/A2/4586:4591,
1/A2/4631:4635
No text annotation
Not in a motif group
IL_6GZ5_1561/A2/4594:4599,
1/A2/4624:4628
UAA/GAN related
Not in a motif group
homologous
IL_5TBW_118
IL_17136.1
IL_6GZ5_1571/A2/4600:4602,
1/A2/4621:4623
Not an internal loop
Not in a motif group
geometric
IL_5VCI_005
IL_82842.2
IL_6GZ5_1581/A2/4603:4605,
1/A2/4616:4620
No text annotation
Not in a motif group
geometric
IL_4M4O_001
IL_95997.1
IL_6GZ5_1591/A2/4642:4647,
1/A2/4667:4672
UAA/GAN with extra cWW
Not in a motif group
geometric
IL_5J7L_350
IL_49767.5
IL_6GZ5_1601/A2/4701:4704,
1/A2/4916:4918
No text annotation
Not in a motif group
IL_6GZ5_1611/A2/4704:4708,
1/A2/4912:4916
No text annotation
Not in a motif group
IL_6GZ5_1621/A2/4708:4709,
1/A2/4910:4912
Single stack bend
Not in a motif group
geometric
IL_4LFB_041
IL_76488.2
IL_6GZ5_1631/A2/4843:4846,
1/A2/4889:4892
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5EW4_002
IL_30621.2
IL_6GZ5_1641/A2/4849:4855,
1/A2/4881:4886
No text annotation
Not in a motif group
IL_6GZ5_1651/A2/4857:4859,
1/A2/4878:4879
No text annotation
Not in a motif group
IL_6GZ5_1661/A2/4930:4933,
1/A2/4941:4944
Tandem non-canonical cWW pairs
Not in a motif group
geometric
IL_5TBW_129
IL_30621.2
IL_6GZ5_1671/A2/4950:4952,
1/A2/5015:5017
No text annotation
Not in a motif group
geometric
IL_5UNE_001
IL_53251.2
IL_6GZ5_1681/A2/4954:4955,
1/A2/5011:5013
No text annotation
Not in a motif group
IL_6GZ5_1691/A2/4958:4960,
1/A2/5003:5008
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_132
IL_90933.2
IL_6GZ5_1701/A2/4961:4967,
1/A2/4997:5002
No text annotation
Not in a motif group
IL_6GZ5_1711/A2/4970:4972,
1/A2/4993:4994
No text annotation
Not in a motif group
homologous
IL_8C3A_140
IL_83039.13
IL_6GZ5_1721/A2/4972:4975,
1/A2/4990:4993
tWS-tSW
Not in a motif group
geometric
IL_5TBW_135
IL_09705.9
IL_6GZ5_1731/A3/64:66,
1/A3/92:95
Isolated non-canonical cWW with bulges
Not in a motif group
homologous
IL_5TBW_145
IL_82068.2
IL_6GZ5_1741/A4/15:16,
1/A4/62:64
Single bulged A
Not in a motif group
homologous
IL_5TBW_372
IL_37497.2
IL_6GZ5_1751/A4/21:27,
1/A4/52:57
No text annotation
Not in a motif group
homologous
IL_5TBW_373
IL_10207.2
IL_6GZ5_1761/A4/28:31,
1/A4/46:51
No text annotation
Not in a motif group
IL_6GZ5_1771/A4/32:36,
1/A4/41:45
Symmetric double minor groove platform
Not in a motif group
geometric
IL_7RQB_114
IL_58103.6
IL_6GZ5_1781/A4/71:78,
1/A4/98:104
8x7 Sarcin-Ricin; G-bulge
Not in a motif group
geometric
IL_5TBW_116
IL_04346.7
IL_6GZ5_1791/A4/79:81,
1/A4/95:97
No text annotation
Not in a motif group
geometric
IL_4V88_470
IL_51629.2
IL_6GZ5_1801/A4/82:85,
1/A4/92:94
No text annotation
Not in a motif group
homologous
IL_5TBW_378
IL_95997.1
IL_6GZ5_1811/B1/23:25,
1/B1/649:651
No text annotation
Not in a motif group
geometric
IL_7A0S_026
IL_51629.2
IL_6GZ5_1821/B1/34:36,
1/B1/519:521
UC cWW
Not in a motif group
homologous
IL_4V88_385
IL_51629.2
IL_6GZ5_1831/B1/37:40,
1/B1/514:518
Double sheared
Not in a motif group
geometric
IL_4WF9_016
IL_09705.9
IL_6GZ5_1841/B1/41:47,
1/B1/479:481
No text annotation
Not in a motif group
geometric
IL_4V88_387
IL_33912.1
IL_6GZ5_1851/B1/49:51,
1/B1/476:477
Minor groove platform
Not in a motif group
homologous
IL_4V88_388
IL_93353.1
IL_6GZ5_1861/B1/57:62,
1/B1/86:88
No text annotation
Not in a motif group
homologous
IL_4V88_389
IL_95004.1
IL_6GZ5_1871/B1/63:68,
1/B1/81:85
No text annotation
Not in a motif group
homologous
IL_4V88_390
IL_77691.1
IL_6GZ5_1881/B1/108:110,
1/B1/351:353
No text annotation
Not in a motif group
geometric