6SV4 Summary

View in PDB or NAKB
Structure Title
6SV4 Summary
Authors
Release Date
2020-03-04
Experimental technique
ELECTRON MICROSCOPY
Resolution
3.3 Å
Chains
  • 17 RNA chains from Saccharomyces cerevisiae
  • 225 other chains
Compounds
18S rRNA, 18S rRNA, 18S rRNA, 40S ribosomal protein S3, 60S ribosomal protein L8-A, 60S ribosomal protein L23-A, 60S ribosomal protein L36-A, 60S ribosomal protein L9-A, 60S ribosomal protein L24-A, 60S ribosomal protein L37-A, 60S ribosomal protein L11-A, 60S ribosomal protein L25, 60S ribosomal protein L38, 60S ribosomal protein L13-A, 60S ribosomal protein L26-A, 60S ribosomal protein L39, 60S ribosomal protein L14-A, 60S ribosomal protein L27-A, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L42-A, 60S ribosomal protein L15-A, 60S ribosomal protein L28, 60S ribosomal protein L41-B, 60S ribosomal protein L43-A, 60S ribosomal protein L16-A, 60S ribosomal protein L29, 60S ribosomal protein L2-A, 60S ribosomal protein L17-A, 60S ribosomal protein L30, 40S ribosomal protein S3, 40S ribosomal protein S3, Rps5p, 60S ribosomal protein L3, 60S ribosomal protein L18-A, 60S ribosomal protein L31-A, 60S ribosomal protein L10, 60S ribosomal protein L4-A, 60S ribosomal protein L19-A, 60S ribosomal protein L32, 60S ribosomal protein L20-A, 60S ribosomal protein L5, 60S ribosomal protein L21-A, 60S ribosomal protein L33-A, 60S ribosomal protein L22-A, 60S ribosomal protein L6-A, 60S ribosomal protein L34-A, 60S ribosomal protein L7-A, 60S ribosomal protein L35-A, 25S rRNA, 5S rRNA, 5.8S rRNA, 60S acidic ribosomal protein P0, Rps5p, Rps5p, 40S ribosomal protein S10-A, 40S ribosomal protein S10-A, 40S ribosomal protein S10-A, 40S ribosomal protein S12, 40S ribosomal protein S12, 40S ribosomal protein S12, 40S ribosomal protein S15, 40S ribosomal protein S15, 40S ribosomal protein S15, 40S ribosomal protein S16-A, 40S ribosomal protein S16-A, 40S ribosomal protein S16-A, 40S ribosomal protein S17-B, 40S ribosomal protein S17-B, 40S ribosomal protein S17-B, 40S ribosomal protein S18-A, 40S ribosomal protein S18-A, 40S ribosomal protein S18-A, 40S ribosomal protein S19-A, 40S ribosomal protein S19-A, 40S ribosomal protein S19-A, 40S ribosomal protein S20, 40S ribosomal protein S20, 40S ribosomal protein S20, 40S ribosomal protein S25-A, 40S ribosomal protein S25-A, 40S ribosomal protein S25-A, 40S ribosomal protein S28-B, 40S ribosomal protein S28-B, 40S ribosomal protein S28-B, 40S ribosomal protein S29-A, 40S ribosomal protein S29-A, 40S ribosomal protein S29-A, Ubiquitin-40S ribosomal protein S31, Ubiquitin-40S ribosomal protein S31, Ubiquitin-40S ribosomal protein S31, Guanine nucleotide-binding protein subunit beta-like protein, Guanine nucleotide-binding protein subunit beta-like protein, Guanine nucleotide-binding protein subunit beta-like protein, 40S ribosomal protein S0-A, 40S ribosomal protein S0-A, 40S ribosomal protein S0-A, 40S ribosomal protein S1-A, 40S ribosomal protein S1-A, 40S ribosomal protein S1-A, 40S ribosomal protein S2, 40S ribosomal protein S2, 40S ribosomal protein S2, 40S ribosomal protein S4-A, 40S ribosomal protein S4-A, 40S ribosomal protein S4-A, 40S ribosomal protein S6-A, 40S ribosomal protein S6-A, 40S ribosomal protein S6-A, 40S ribosomal protein S7-A, 40S ribosomal protein S7-A, 40S ribosomal protein S7-A, 40S ribosomal protein S8-A, 40S ribosomal protein S8-A, 40S ribosomal protein S8-A, 40S ribosomal protein S9-A, 40S ribosomal protein S9-A, 40S ribosomal protein S9-A, 40S ribosomal protein S11-A, 60S ribosomal protein L8-A, 60S ribosomal protein L23-A, 60S ribosomal protein L36-A, 60S ribosomal protein L9-A, 60S ribosomal protein L24-A, 60S ribosomal protein L37-A, 60S ribosomal protein L11-A, 60S ribosomal protein L25, 60S ribosomal protein L38, 60S ribosomal protein L13-A, 60S ribosomal protein L26-A, 60S ribosomal protein L39, 60S ribosomal protein L14-A, 60S ribosomal protein L27-A, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L42-A, 60S ribosomal protein L15-A, 60S ribosomal protein L28, 60S ribosomal protein L41-B, 60S ribosomal protein L43-A, 60S ribosomal protein L16-A, 60S ribosomal protein L29, 60S ribosomal protein L2-A, 60S ribosomal protein L17-A, 60S ribosomal protein L30, 40S ribosomal protein S11-A, 40S ribosomal protein S11-A, 40S ribosomal protein S13, 60S ribosomal protein L3, 60S ribosomal protein L18-A, 60S ribosomal protein L31-A, 60S ribosomal protein L10, 60S ribosomal protein L4-A, 60S ribosomal protein L19-A, 60S ribosomal protein L32, 60S ribosomal protein L20-A, 60S ribosomal protein L5, 60S ribosomal protein L21-A, 60S ribosomal protein L33-A, 60S ribosomal protein L22-A, 60S ribosomal protein L6-A, 60S ribosomal protein L34-A, 60S ribosomal protein L7-A, 60S ribosomal protein L35-A, 25S rRNA, 5S rRNA, 5.8S rRNA, 60S acidic ribosomal protein P0, 40S ribosomal protein S13, 40S ribosomal protein S13, 40S ribosomal protein S14-A, 60S ribosomal protein L3, 60S ribosomal protein L18-A, 60S ribosomal protein L31-A, 60S ribosomal protein L10, 60S ribosomal protein L4-A, 60S ribosomal protein L19-A, 60S ribosomal protein L32, 60S ribosomal protein L20-A, 60S ribosomal protein L5, 60S ribosomal protein L21-A, 60S ribosomal protein L33-A, 60S ribosomal protein L22-A, 60S ribosomal protein L6-A, 60S ribosomal protein L34-A, 60S ribosomal protein L7-A, 60S ribosomal protein L35-A, 25S rRNA, 5S rRNA, 5.8S rRNA, 60S acidic ribosomal protein P0, 40S ribosomal protein S14-A, 40S ribosomal protein S14-A, 40S ribosomal protein S21-A, 40S ribosomal protein S21-A, 40S ribosomal protein S21-A, 40S ribosomal protein S22-A, 40S ribosomal protein S22-A, 40S ribosomal protein S22-A, 40S ribosomal protein S23-A, 40S ribosomal protein S23-A, 40S ribosomal protein S23-A, 40S ribosomal protein S24-A, 40S ribosomal protein S24-A, 40S ribosomal protein S24-A, 40S ribosomal protein S26-A, 40S ribosomal protein S26-A, 40S ribosomal protein S26-A, 40S ribosomal protein S27-A, 40S ribosomal protein S27-A, 40S ribosomal protein S27-A, 40S ribosomal protein S30-A, 40S ribosomal protein S30-A, 40S ribosomal protein S30-A, tRNA (P/E), tRNA (P/E), tRNA (P/P), tRNA (A/P), tRNA (A/P), 60S ribosomal protein L8-A, 60S ribosomal protein L23-A, 60S ribosomal protein L36-A, 60S ribosomal protein L9-A, 60S ribosomal protein L24-A, 60S ribosomal protein L37-A, 60S ribosomal protein L11-A, 60S ribosomal protein L25, 60S ribosomal protein L38, 60S ribosomal protein L13-A, 60S ribosomal protein L26-A, 60S ribosomal protein L39, 60S ribosomal protein L14-A, 60S ribosomal protein L27-A, Ubiquitin-60S ribosomal protein L40, 60S ribosomal protein L42-A, 60S ribosomal protein L15-A, 60S ribosomal protein L28, 60S ribosomal protein L41-B, 60S ribosomal protein L43-A, 60S ribosomal protein L16-A, 60S ribosomal protein L29, 60S ribosomal protein L2-A, 60S ribosomal protein L17-A, 60S ribosomal protein L30

Pairwise Interactions

Interactions annotated by FR3D: View all

RNA 3D Motifs

In the current release of the RNA 3D Motif Atlas, 6SV4 contains:
  • 689 internal loops from 0 motif groups
  • 359 hairpin loops from 0 motif groups
  • 92 three-way junctions
More

3D Redundancy

6SV4 has chains which belong to the following equivalence classes in the current representative set:

Similar structures

None found
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