Motif HL_02733.5 Version HL_02733.5 of this group appears in releases 3.54 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_069 | 7A0S | 0.3377 | 1 | Y | 5S rRNA | C | 40 | A | 41 | U | 42 | C | 44 | C | 45 | G | 46 | cWW |
| 2 | HL_4WF9_066 | 4WF9 | 0.2252 | 1 | Y | 5S rRNA | C | 36 | A | 37 | U | 38 | C | 40 | C | 41 | G | 42 | cWW |
| 3 | HL_4V9F_071 | 4V9F | 0.0917 | 1 | 9 | 5S rRNA | C | 37 | A | 38 | U | 39 | C | 41 | C | 42 | G | 43 | cWW |
| 4 | HL_7RQB_070 | 7RQB | 0.0740 | 1 | 1B | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 5 | HL_5J7L_203 | 5J7L | 0.0000 | 1 | DB | 5S rRNA | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 6 | HL_1MJI_002 | 1MJI | 0.0858 | 1 | D | 5S rRNA fragment | C | 38 | A | 39 | U | 40 | C | 42 | C | 43 | G | 44 | cWW |
| 7 | HL_5TBW_185 | 5TBW | 0.2329 | 0 | AS | 5S rRNA | C | 36 | G | 37 | U | 38 | C | 39 | C | 40 | G | 41 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUGCCG | 4 |
| CAUCCCG | 1 |
| CAUUCCG | 1 |
| CGUCCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUGCC | 4 |
| AUCCC | 1 |
| AUUCC | 1 |
| GUCC | 1 |
Release history
| Release | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 | 3.77 | 3.78 | 3.79 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 | 2023-12-06 | 2024-01-03 | 2024-01-03 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-R-R-R
- Heat map statistics
- Min 0.07 | Avg 0.20 | Max 0.46
Coloring options: