Motif HL_06192.1 Version HL_06192.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5TBW_001 | 5TBW | 0.1180 | 2 | 1 | LSU rRNA | U | 38 | A | 39 | G | 41 | C | 42 | U | 44 | A | 45 | cWW | ntSH |
| 2 | HL_7A0S_006 | 7A0S | 0.1466 | 2 | X | LSU rRNA | G | 171 | A | 172 | A | 174 | C | 175 | U | 177 | C | 178 | cWW | ntSH |
| 3 | HL_7RQB_006 | 7RQB | 0.0815 | 2 | 1A | LSU rRNA | G | 194 | A | 195 | A | 197 | C | 198 | U | 200 | C | 201 | cWW | tSH |
| 4 | HL_4V9F_006 | 4V9F | 0.0000 | 2 | 0 | LSU rRNA | G | 164 | A | 165 | A | 167 | C | 168 | U | 170 | C | 171 | cWW | tSH |
| 5 | HL_5J7L_139 | 5J7L | 0.0990 | 2 | DA | LSU rRNA | G | 194 | A | 195 | A | 197 | C | 198 | U | 200 | C | 201 | cWW | ntSH |
| 6 | HL_4WF9_006 | 4WF9 | 0.1042 | 2 | X | LSU rRNA | G | 197 | A | 198 | A | 200 | C | 201 | U | 203 | C | 204 | cWW | tSH |
| 7 | HL_4V9F_062 | 4V9F | 0.4012 | 3 | 0 | LSU rRNA | A | 2506 | G | 2507 | A | 2509 | C | 2510 | A | 2513 | U | 2514 | cWW | tSH |
| 8 | HL_5J7L_193 | 5J7L | 0.4911 | 3 | DA | LSU rRNA | A | 2471 | G | 2472 | U | 2474 | C | 2475 | A | 2478 | U | 2479 | cWW | tSH |
| 9 | HL_7RQB_060 | 7RQB | 0.4898 | 3 | 1A | LSU rRNA | C | 2471 | G | 2472 | C | 2474 | C | 2475 | A | 2478 | G | 2479 | cWW | tSH |
| 10 | HL_5TBW_061 | 5TBW | 0.5125 | 3 | 1 | LSU rRNA | C | 2840 | G | 2841 | U | 2843 | C | 2844 | A | 2847 | G | 2848 | cWW | tSH |
| 11 | HL_4WF9_056 | 4WF9 | 0.5051 | 3 | X | LSU rRNA | A | 2498 | G | 2499 | U | 2501 | C | 2502 | A | 2505 | U | 2506 | cWW | tSH |
| 12 | HL_7A0S_059 | 7A0S | 0.5295 | 3 | X | LSU rRNA | A | 2450 | G | 2451 | C | 2453 | C | 2454 | A | 2457 | U | 2458 | cWW | tSH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAACAUC | 5 |
| UAAGCAUA | 1 |
| AGCACAUAU | 1 |
| AGUUCAUAU | 1 |
| CGUCCACAG | 1 |
| CGUUCAUAG | 1 |
| AGUUCACAU | 1 |
| AGUCCAUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAACAU | 5 |
| GUUCAUA | 2 |
| AAGCAU | 1 |
| GCACAUA | 1 |
| GUCCACA | 1 |
| GUUCACA | 1 |
| GUCCAUA | 1 |
- Annotations
-
- (12)
- Basepair signature
- cWW-tSH-F-F
- Heat map statistics
- Min 0.07 | Avg 0.30 | Max 0.53
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