RNA 3D Hub //

Motif HL_06192.1 Version HL_06192.1 of this group appears in releases 3.77 to 3.79

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 61-62-5
1 HL_5TBW_0015TBW0.118021 LSU rRNAU38A39G41C42U44A45cWWntSH
2 HL_7A0S_0067A0S0.14662X LSU rRNAG171A172A174C175U177C178cWWntSH
3 HL_7RQB_0067RQB0.081521A LSU rRNAG194A195A197C198U200C201cWWtSH
4 HL_4V9F_0064V9F0.000020 LSU rRNAG164A165A167C168U170C171cWWtSH
5 HL_5J7L_1395J7L0.09902DA LSU rRNAG194A195A197C198U200C201cWWntSH
6 HL_4WF9_0064WF90.10422X LSU rRNAG197A198A200C201U203C204cWWtSH
7 HL_4V9F_0624V9F0.401230 LSU rRNAA2506G2507A2509C2510A2513U2514cWWtSH
8 HL_5J7L_1935J7L0.49113DA LSU rRNAA2471G2472U2474C2475A2478U2479cWWtSH
9 HL_7RQB_0607RQB0.489831A LSU rRNAC2471G2472C2474C2475A2478G2479cWWtSH
10 HL_5TBW_0615TBW0.512531 LSU rRNAC2840G2841U2843C2844A2847G2848cWWtSH
11 HL_4WF9_0564WF90.50513X LSU rRNAA2498G2499U2501C2502A2505U2506cWWtSH
12 HL_7A0S_0597A0S0.52953X LSU rRNAA2450G2451C2453C2454A2457U2458cWWtSH

3D structures

Complete motif including flanking bases
SequenceCounts
GAAACAUC5
UAAGCAUA1
AGCACAUAU1
AGUUCAUAU1
CGUCCACAG1
CGUUCAUAG1
AGUUCACAU1
AGUCCAUAU1
Non-Watson-Crick part of the motif
SequenceCounts
AAACAU5
GUUCAUA2
AAGCAU1
GCACAUA1
GUCCACA1
GUUCACA1
GUCCAUA1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (12)
    • Basepair signature
    cWW-tSH-F-F
    Heat map statistics
    Min 0.07 | Avg 0.30 | Max 0.53
    Help

    Coloring options:

    HL_5TBW_001:HL_5TBW_001 = 0HL_5TBW_001:HL_7A0S_006 = 0.1317HL_5TBW_001:HL_7RQB_006 = 0.1272HL_5TBW_001:HL_4V9F_006 = 0.118HL_5TBW_001:HL_5J7L_139 = 0.1208HL_5TBW_001:HL_4WF9_006 = 0.1263HL_5TBW_001:HL_4V9F_062 = 0.4093HL_5TBW_001:HL_5J7L_193 = 0.4905HL_5TBW_001:HL_7RQB_060 = 0.5021HL_5TBW_001:HL_5TBW_061 = 0.5217HL_5TBW_001:HL_4WF9_056 = 0.5049HL_5TBW_001:HL_7A0S_059 = 0.5255HL_7A0S_006:HL_5TBW_001 = 0.1317HL_7A0S_006:HL_7A0S_006 = 0HL_7A0S_006:HL_7RQB_006 = 0.0913HL_7A0S_006:HL_4V9F_006 = 0.1466HL_7A0S_006:HL_5J7L_139 = 0.1016HL_7A0S_006:HL_4WF9_006 = 0.1175HL_7A0S_006:HL_4V9F_062 = 0.4029HL_7A0S_006:HL_5J7L_193 = 0.4931HL_7A0S_006:HL_7RQB_060 = 0.5006HL_7A0S_006:HL_5TBW_061 = 0.5337HL_7A0S_006:HL_4WF9_056 = 0.5056HL_7A0S_006:HL_7A0S_059 = 0.5292HL_7RQB_006:HL_5TBW_001 = 0.1272HL_7RQB_006:HL_7A0S_006 = 0.0913HL_7RQB_006:HL_7RQB_006 = 0HL_7RQB_006:HL_4V9F_006 = 0.0815HL_7RQB_006:HL_5J7L_139 = 0.0731HL_7RQB_006:HL_4WF9_006 = 0.0902HL_7RQB_006:HL_4V9F_062 = 0.3917HL_7RQB_006:HL_5J7L_193 = 0.4864HL_7RQB_006:HL_7RQB_060 = 0.4883HL_7RQB_006:HL_5TBW_061 = 0.5163HL_7RQB_006:HL_4WF9_056 = 0.4974HL_7RQB_006:HL_7A0S_059 = 0.525HL_4V9F_006:HL_5TBW_001 = 0.118HL_4V9F_006:HL_7A0S_006 = 0.1466HL_4V9F_006:HL_7RQB_006 = 0.0815HL_4V9F_006:HL_4V9F_006 = 0HL_4V9F_006:HL_5J7L_139 = 0.099HL_4V9F_006:HL_4WF9_006 = 0.1042HL_4V9F_006:HL_4V9F_062 = 0.4012HL_4V9F_006:HL_5J7L_193 = 0.4911HL_4V9F_006:HL_7RQB_060 = 0.4898HL_4V9F_006:HL_5TBW_061 = 0.5125HL_4V9F_006:HL_4WF9_056 = 0.5051HL_4V9F_006:HL_7A0S_059 = 0.5295HL_5J7L_139:HL_5TBW_001 = 0.1208HL_5J7L_139:HL_7A0S_006 = 0.1016HL_5J7L_139:HL_7RQB_006 = 0.0731HL_5J7L_139:HL_4V9F_006 = 0.099HL_5J7L_139:HL_5J7L_139 = 0HL_5J7L_139:HL_4WF9_006 = 0.0687HL_5J7L_139:HL_4V9F_062 = 0.3745HL_5J7L_139:HL_5J7L_193 = 0.4694HL_5J7L_139:HL_7RQB_060 = 0.4721HL_5J7L_139:HL_5TBW_061 = 0.5033HL_5J7L_139:HL_4WF9_056 = 0.48HL_5J7L_139:HL_7A0S_059 = 0.508HL_4WF9_006:HL_5TBW_001 = 0.1263HL_4WF9_006:HL_7A0S_006 = 0.1175HL_4WF9_006:HL_7RQB_006 = 0.0902HL_4WF9_006:HL_4V9F_006 = 0.1042HL_4WF9_006:HL_5J7L_139 = 0.0687HL_4WF9_006:HL_4WF9_006 = 0HL_4WF9_006:HL_4V9F_062 = 0.3775HL_4WF9_006:HL_5J7L_193 = 0.4678HL_4WF9_006:HL_7RQB_060 = 0.4673HL_4WF9_006:HL_5TBW_061 = 0.4974HL_4WF9_006:HL_4WF9_056 = 0.4781HL_4WF9_006:HL_7A0S_059 = 0.5057HL_4V9F_062:HL_5TBW_001 = 0.4093HL_4V9F_062:HL_7A0S_006 = 0.4029HL_4V9F_062:HL_7RQB_006 = 0.3917HL_4V9F_062:HL_4V9F_006 = 0.4012HL_4V9F_062:HL_5J7L_139 = 0.3745HL_4V9F_062:HL_4WF9_006 = 0.3775HL_4V9F_062:HL_4V9F_062 = 0HL_4V9F_062:HL_5J7L_193 = 0.1495HL_4V9F_062:HL_7RQB_060 = 0.1761HL_4V9F_062:HL_5TBW_061 = 0.1954HL_4V9F_062:HL_4WF9_056 = 0.1525HL_4V9F_062:HL_7A0S_059 = 0.2186HL_5J7L_193:HL_5TBW_001 = 0.4905HL_5J7L_193:HL_7A0S_006 = 0.4931HL_5J7L_193:HL_7RQB_006 = 0.4864HL_5J7L_193:HL_4V9F_006 = 0.4911HL_5J7L_193:HL_5J7L_139 = 0.4694HL_5J7L_193:HL_4WF9_006 = 0.4678HL_5J7L_193:HL_4V9F_062 = 0.1495HL_5J7L_193:HL_5J7L_193 = 0HL_5J7L_193:HL_7RQB_060 = 0.1212HL_5J7L_193:HL_5TBW_061 = 0.1275HL_5J7L_193:HL_4WF9_056 = 0.1434HL_5J7L_193:HL_7A0S_059 = 0.1605HL_7RQB_060:HL_5TBW_001 = 0.5021HL_7RQB_060:HL_7A0S_006 = 0.5006HL_7RQB_060:HL_7RQB_006 = 0.4883HL_7RQB_060:HL_4V9F_006 = 0.4898HL_7RQB_060:HL_5J7L_139 = 0.4721HL_7RQB_060:HL_4WF9_006 = 0.4673HL_7RQB_060:HL_4V9F_062 = 0.1761HL_7RQB_060:HL_5J7L_193 = 0.1212HL_7RQB_060:HL_7RQB_060 = 0HL_7RQB_060:HL_5TBW_061 = 0.1154HL_7RQB_060:HL_4WF9_056 = 0.1725HL_7RQB_060:HL_7A0S_059 = 0.1746HL_5TBW_061:HL_5TBW_001 = 0.5217HL_5TBW_061:HL_7A0S_006 = 0.5337HL_5TBW_061:HL_7RQB_006 = 0.5163HL_5TBW_061:HL_4V9F_006 = 0.5125HL_5TBW_061:HL_5J7L_139 = 0.5033HL_5TBW_061:HL_4WF9_006 = 0.4974HL_5TBW_061:HL_4V9F_062 = 0.1954HL_5TBW_061:HL_5J7L_193 = 0.1275HL_5TBW_061:HL_7RQB_060 = 0.1154HL_5TBW_061:HL_5TBW_061 = 0HL_5TBW_061:HL_4WF9_056 = 0.1657HL_5TBW_061:HL_7A0S_059 = 0.1806HL_4WF9_056:HL_5TBW_001 = 0.5049HL_4WF9_056:HL_7A0S_006 = 0.5056HL_4WF9_056:HL_7RQB_006 = 0.4974HL_4WF9_056:HL_4V9F_006 = 0.5051HL_4WF9_056:HL_5J7L_139 = 0.48HL_4WF9_056:HL_4WF9_006 = 0.4781HL_4WF9_056:HL_4V9F_062 = 0.1525HL_4WF9_056:HL_5J7L_193 = 0.1434HL_4WF9_056:HL_7RQB_060 = 0.1725HL_4WF9_056:HL_5TBW_061 = 0.1657HL_4WF9_056:HL_4WF9_056 = 0HL_4WF9_056:HL_7A0S_059 = 0.1358HL_7A0S_059:HL_5TBW_001 = 0.5255HL_7A0S_059:HL_7A0S_006 = 0.5292HL_7A0S_059:HL_7RQB_006 = 0.525HL_7A0S_059:HL_4V9F_006 = 0.5295HL_7A0S_059:HL_5J7L_139 = 0.508HL_7A0S_059:HL_4WF9_006 = 0.5057HL_7A0S_059:HL_4V9F_062 = 0.2186HL_7A0S_059:HL_5J7L_193 = 0.1605HL_7A0S_059:HL_7RQB_060 = 0.1746HL_7A0S_059:HL_5TBW_061 = 0.1806HL_7A0S_059:HL_4WF9_056 = 0.1358HL_7A0S_059:HL_7A0S_059 = 0HL_5TBW_001HL_7A0S_006HL_7RQB_006HL_4V9F_006HL_5J7L_139HL_4WF9_006HL_4V9F_062HL_5J7L_193HL_7RQB_060HL_5TBW_061HL_4WF9_056HL_7A0S_059Discrepancy0.000.100.200.300.400.50
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