Motif HL_06192.3 Version HL_06192.3 of this group appears in releases 3.87 to 3.87

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-5
1	HL_7A0S_059	7A0S	0.5295	3	X	LSU rRNA	A	2450	G	2451	C	2453	C	2454	A	2457	U	2458	cWW	tSH
2	HL_4WF9_056	4WF9	0.5051	3	X	LSU rRNA	A	2498	G	2499	U	2501	C	2502	A	2505	U	2506	cWW	tSH
3	HL_5J7L_193	5J7L	0.4911	3	DA	LSU rRNA	A	2471	G	2472	U	2474	C	2475	A	2478	U	2479	cWW	tSH
4	HL_8VTW_059	8VTW	0.4996	3	1A	LSU rRNA	C	2471	G	2472	C	2474	C	2475	A	2478	G	2479	cWW	tSH
5	HL_5TBW_061	5TBW	0.5125	3	1	LSU rRNA	C	2840	G	2841	U	2843	C	2844	A	2847	G	2848	cWW	tSH
6	HL_8C3A_062	8C3A	0.4748	3	1	LSU rRNA	C	2812	G	2813	U	2815	C	2816	A	2819	G	2820	cWW	tSH
7	HL_4V9F_062	4V9F	0.4012	3	0	LSU rRNA	A	2506	G	2507	A	2509	C	2510	A	2513	U	2514	cWW	tSH
8	HL_8C3A_001	8C3A	0.1183	2	1	LSU rRNA	U	37	A	38	G	40	C	41	U	43	A	44	cWW	ntSH
9	HL_5TBW_001	5TBW	0.1180	2	1	LSU rRNA	U	38	A	39	G	41	C	42	U	44	A	45	cWW	ntSH
10	HL_4V9F_006	4V9F	0.0000	2	0	LSU rRNA	G	164	A	165	A	167	C	168	U	170	C	171	cWW	tSH
11	HL_4WF9_006	4WF9	0.1042	2	X	LSU rRNA	G	197	A	198	A	200	C	201	U	203	C	204	cWW	tSH
12	HL_5J7L_139	5J7L	0.0990	2	DA	LSU rRNA	G	194	A	195	A	197	C	198	U	200	C	201	cWW	ntSH
13	HL_8VTW_005	8VTW	0.0835	2	1A	LSU rRNA	G	194	A	195	A	197	C	198	U	200	C	201	cWW	tSH
14	HL_7A0S_006	7A0S	0.1466	2	X	LSU rRNA	G	171	A	172	A	174	C	175	U	177	C	178	cWW	ntSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GAAACAUC	5
CGUUCAUAG	2
UAAGCAUA	2
AGUCCAUAU	1
AGUUCACAU	1
AGUUCAUAU	1
CGUCCACAG	1
AGCACAUAU	1

Non-Watson-Crick part of the motif

Sequence	Counts
AAACAU	5
GUUCAUA	3
AAGCAU	2
GUCCAUA	1
GUUCACA	1
GUCCACA	1
GCACAUA	1

Release history

Release	3.87
Date	2024-08-14
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (14)
Basepair signature: cWW-tSH-F-F
Heat map statistics: Min 0.07 | Avg 0.30 | Max 0.54

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