Motif HL_06440.1 Version HL_06440.1 of this group appears in releases 0.1 to 0.2
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_3O30_023 | 3O30 | 0.0000 | 1 | 1 | U | 1055 | U | 1056 | U | 1057 | U | 1058 | U | 1060 | A | 1061 | A | 1062 | U | 1063 | G | 1064 | ntSH | ||
2 | HL_2XZM_021 | 2XZM | 0.7921 | 2 | A | G | 975 | A | 976 | U | 977 | C | 978 | G | 980 | A | 981 | A | 983 | C | 984 | C | 985 | cWW | ||
3 | HL_3O30_022 | 3O30 | 0.8563 | 2 | 1 | G | 997 | A | 998 | U | 999 | C | 1000 | G | 1002 | A | 1003 | A | 1005 | C | 1006 | C | 1007 | cWW | ||
4 | HL_3O30_020 | 3O30 | 0.7269 | 1 | 1 | A | 900 | G | 901 | G | 902 | U | 903 | A | 905 | A | 906 | A | 907 | U | 908 | U | 909 | cWW | ||
5 | HL_3O30_031 | 3O30 | 0.6610 | 0 | 1 | G | 1395 | U | 1396 | U | 1397 | U | 1398 | C | 1399 | A | 1400 | A | 1401 | G | 1402 | C | 1403 | cWW | ncWW | ntSH |
6 | HL_1FJG_017 | 1FJG | 0.7693 | 2 | A | G | 786 | A | 787 | U | 788 | U | 789 | G | 791 | A | 792 | A | 794 | C | 795 | C | 796 | cWW | ||
7 | HL_2XZM_019 | 2XZM | 0.8739 | 1 | A | A | 878 | G | 879 | G | 880 | U | 881 | A | 883 | A | 884 | A | 885 | U | 886 | U | 887 | cWW | tSH | |
8 | HL_2AW7_015 | 2AW7 | 0.8827 | 1 | A | C | 689 | G | 690 | G | 691 | U | 692 | A | 694 | A | 695 | A | 696 | U | 697 | G | 698 | cWW | tSH | tSH |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GAUCAGAUACC | 2 |
AGGUGAAAUU | 2 |
UUUUUUAAUG | 1 |
GUUUCAAGC | 1 |
GAUUAGAUACC | 1 |
CGGUGAAAUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GGUGAAAU | 3 |
AUCAGAUAC | 2 |
UUUUUAAU | 1 |
UUUCAAG | 1 |
AUUAGAUAC | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
Child motif | Common motif instances | Only in HL_06440.1 | Only in the child motif |
---|---|---|---|
HL_46175.1 Compare | HL_2AW7_015, HL_1FJG_017, HL_2XZM_019, HL_2XZM_021 | HL_3O30_020, HL_3O30_022, HL_3O30_031, HL_3O30_023 | HL_3R9X_001, HL_1FJG_015, HL_4A1C_004, HL_3U5F_023, HL_3U5F_021, HL_2AW7_017 |
Coloring options: