Motif HL_46175.1 Version HL_46175.1 of this group appears in releases 0.3 to 1.4

Download

Csv

Json

Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6		7		8		9		10	1-10	2-9	3-8	4-8
1	HL_3R9X_001	3R9X	0.6205	0	C	RNA301	A	1513	G	1514	G	1515	G	1516	G	1517	A	1518	A	1519	C	1520	C	1521	U	1522	cWW	ncWW		ncWW
2	HL_3U5F_023	3U5F	0.3313	1	6	18S rRNA	G	997	A	998	U	999	C	1000	A	1001	G	1002	A	1003	A	1005	C	1006	C	1007	cWW
3	HL_2XZM_021	2XZM	0.1858	1	A	18S RRNA	G	975	A	976	U	977	C	978	A	979	G	980	A	981	A	983	C	984	C	985	cWW
4	HL_1FJG_017	1FJG	0.1052	1	A	SSU rRNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW
5	HL_2AW7_017	2AW7	0.0000	1	A	16S ribosomal RNA	G	786	A	787	U	788	U	789	A	790	G	791	A	792	A	794	C	795	C	796	cWW
6	HL_2AW7_015	2AW7	0.3320	0	A	16S ribosomal RNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH	tSH
7	HL_1FJG_015	1FJG	0.3493	0	A	SSU rRNA	C	689	G	690	G	691	U	692	G	693	A	694	A	695	A	696	U	697	G	698	cWW	tSH	tSH
8	HL_2XZM_019	2XZM	0.4477	0	A	18S RRNA	A	878	G	879	G	880	U	881	G	882	A	883	A	884	A	885	U	886	U	887	cWW		tSH
9	HL_3U5F_021	3U5F	0.4758	0	6	18S rRNA	A	900	G	901	G	902	U	903	G	904	A	905	A	906	A	907	U	908	U	909	cWW		ntSH
10	HL_4A1C_004	4A1C	0.3928	0	2	5.8S RRNA	G	121	U	122	G	123	U	124	A	125	A	126	A	127	A	128	A	129	C	130	cWW	ncWW	ntSH

3D structures

Complete motif including flanking bases

Sequence	Counts
GAUCAGAUACC	2
GAUUAGAUACC	2
CGGUGAAAUG	2
AGGUGAAAUU	2
AGGGGAACCU	1
GUGUAAAAAC	1

Non-Watson-Crick part of the motif

Sequence	Counts
GGUGAAAU	4
AUCAGAUAC	2
AUUAGAUAC	2
GGGGAACC	1
UGUAAAAA	1

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8	1.0	1.1	1.2	1.3	1.4
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-06	2013-05-04	2013-06-01	2013-07-03
Status	> 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_46175.1	Only in the parent motif
HL_06440.1 Compare	HL_2AW7_015, HL_1FJG_017, HL_2XZM_019, HL_2XZM_021	HL_3R9X_001, HL_1FJG_015, HL_4A1C_004, HL_3U5F_023, HL_3U5F_021, HL_2AW7_017	HL_3O30_020, HL_3O30_022, HL_3O30_031, HL_3O30_023
HL_43963.1 Compare	HL_2AW7_017	HL_2XZM_019, HL_2XZM_021, HL_3R9X_001, HL_1FJG_017, HL_1FJG_015, HL_4A1C_004, HL_3U5F_023, HL_3U5F_021, HL_2AW7_015	HL_3O30_016
HL_30310.1 Compare	HL_1FJG_015	HL_2XZM_019, HL_2XZM_021, HL_3R9X_001, HL_1FJG_017, HL_4A1C_004, HL_3U5F_023, HL_3U5F_021, HL_2AW7_017, HL_2AW7_015

Children motifs

Child motif	Common motif instances	Only in HL_46175.1	Only in the child motif
HL_46175.2 Compare	HL_1FJG_017, HL_1FJG_015, HL_4A1C_004, HL_3U5F_023, HL_3U5F_021, HL_2AW7_017, HL_2AW7_015	HL_3R9X_001, HL_2XZM_019, HL_2XZM_021	HL_1P6V_002, HL_4BPP_020, HL_4BPP_022
HL_65347.1 Compare	HL_3R9X_001	HL_2XZM_019, HL_2XZM_021, HL_1FJG_017, HL_1FJG_015, HL_4A1C_004, HL_3U5F_023, HL_3U5F_021, HL_2AW7_017, HL_2AW7_015	HL_2AW7_030

Annotations: (10)
Basepair signature: cWW-R-tSH-R-R-R-R
Heat map statistics: Min 0.08 | Avg 0.40 | Max 0.86

Help

Coloring options: Nucleotide numbers

Copyright 2025 BGSU RNA group. Page generated in 0.1433 s