Motif HL_08002.4 Version HL_08002.4 of this group appears in releases 3.12 to 3.47

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6	1-6	2-3
1	HL_6DN2_004	6DN2	0.1414	2	T-loop with unstacked turn	Y	RNA (56-MER)	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
2	HL_3F2X_005	3F2X	0.1544	2	T-loop with unstacked turn	X	FMN riboswitch	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
3	HL_5C45_004	5C45	0.1315	2	T-loop with unstacked turn	Y	FMN Riboswitch	G	88	U	89	A	92	G	93	U	94	C	95	cWW	tWH
4	HL_5C45_002	5C45	0.0000	2	T-loop with unstacked turn	X	FMN Riboswitch	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
5	HL_3F2X_002	3F2X	0.0804	2	T-loop with unstacked turn	X	FMN riboswitch	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
6	HL_6DN2_002	6DN2	0.1052	2	T-loop with unstacked turn	X	RNA RIBOSWITCH	G	36	U	37	A	40	G	41	U	42	C	43	cWW	tWH
7	HL_4FRG_003	4FRG	0.1463	3	T-loop with unstacked turn	B	cobalamin riboswitch aptamer domain	G	58	U	59	A	63	C	64	U	65	C	66	cWW	tWH
8	HL_4FRN_007	4FRN	0.1616	3	T-loop with unstacked turn	B	Cobalamin riboswitch aptamer domain	G	56	U	57	A	61	C	62	U	63	C	64	cWW	tWH
9	HL_4WF9_012	4WF9	0.2942	3	T-loop with unstacked turn	X	LSU rRNA	G	370	U	371	A	375	A	376	U	377	C	378	cWW	ntWH
10	HL_5J7L_144	5J7L	0.2283	3	T-loop with unstacked turn	DA	LSU rRNA	G	327	U	328	A	332	G	333	C	334	C	335	cWW	tWH
11	HL_4V9F_012	4V9F	0.2716	3	T-loop with unstacked turn	0	LSU rRNA	G	334	U	335	A	339	A	340	C	341	C	342	cWW	tWH
12	HL_4Y4O_114	4Y4O	0.2584	3	T-loop with unstacked turn	2A	LSU rRNA	G	327	U	328	A	332	G	333	C	334	C	335	cWW	tWH
13	HL_5TBW_007	5TBW	0.2869	3	T-loop with unstacked turn	1	LSU rRNA	G	216	U	217	A	221	A	222	U	223	C	224	cWW	tWH
14	HL_4IOA_011	4IOA	1.1977	3	T-loop with unstacked turn	X	LSU rRNA	G	338	U	339	A	343	G	344	U	345	C	346	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GUAGAGUC	3
GUAUAGUC	3
GUUAUACUC	2
GUAAUAAUC	1
GUGACAGCC	1
GUGACAACC	1
GUGAAAGCC	1
GUGAGAAUC	1
GUGAGAGUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
UAGAGU	3
UAUAGU	3
UUAUACU	2
UAAUAAU	1
UGACAGC	1
UGACAAC	1
UGAAAGC	1
UGAGAAU	1
UGAGAGU	1

Release history

Release	3.12	3.13	3.14	3.15	3.16	3.17	3.18	3.19	3.20	3.21	3.22	3.23	3.24	3.25	3.26	3.27	3.28	3.29	3.30	3.31	3.32	3.33	3.34	3.35	3.36	3.37	3.38	3.39	3.40	3.41	3.42	3.43	3.44	3.45	3.46	3.47
Date	2018-11-16	2018-12-14	2019-01-11	2019-02-08	2019-03-08	2019-04-05	2019-05-03	2019-05-31	2019-06-28	2019-07-26	2019-08-23	2019-09-19	2019-10-16	2019-11-13	2019-12-11	2020-01-08	2020-02-05	2020-03-04	2020-04-01	2020-04-29	2020-05-27	2020-06-24	2020-07-22	2020-08-19	2020-09-16	2020-10-14	2020-11-11	2020-12-09	2021-01-06	2021-02-03	2021-03-03	2021-03-31	2021-04-28	2021-05-26	2021-06-23	2021-07-21
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: T-loop with unstacked turn (14)
Basepair signature: cWW-R-R-tWH
Heat map statistics: Min 0.05 | Avg 0.34 | Max 1.21

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