Motif HL_08002.4 Version HL_08002.4 of this group appears in releases 3.12 to 3.47
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-3 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6DN2_004 | 6DN2 | 0.1414 | 2 | Y | RNA (56-MER) | G | 88 | U | 89 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH | |
| 2 | HL_3F2X_005 | 3F2X | 0.1544 | 2 | X | FMN riboswitch | G | 88 | U | 89 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH | |
| 3 | HL_5C45_004 | 5C45 | 0.1315 | 2 | Y | FMN Riboswitch | G | 88 | U | 89 | A | 92 | G | 93 | U | 94 | C | 95 | cWW | tWH | |
| 4 | HL_5C45_002 | 5C45 | 0.0000 | 2 | X | FMN Riboswitch | G | 36 | U | 37 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH | |
| 5 | HL_3F2X_002 | 3F2X | 0.0804 | 2 | X | FMN riboswitch | G | 36 | U | 37 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH | |
| 6 | HL_6DN2_002 | 6DN2 | 0.1052 | 2 | X | RNA RIBOSWITCH | G | 36 | U | 37 | A | 40 | G | 41 | U | 42 | C | 43 | cWW | tWH | |
| 7 | HL_4FRG_003 | 4FRG | 0.1463 | 3 | B | cobalamin riboswitch aptamer domain | G | 58 | U | 59 | A | 63 | C | 64 | U | 65 | C | 66 | cWW | tWH | |
| 8 | HL_4FRN_007 | 4FRN | 0.1616 | 3 | B | Cobalamin riboswitch aptamer domain | G | 56 | U | 57 | A | 61 | C | 62 | U | 63 | C | 64 | cWW | tWH | |
| 9 | HL_4WF9_012 | 4WF9 | 0.2942 | 3 | X | LSU rRNA | G | 370 | U | 371 | A | 375 | A | 376 | U | 377 | C | 378 | cWW | ntWH | |
| 10 | HL_5J7L_144 | 5J7L | 0.2283 | 3 | DA | LSU rRNA | G | 327 | U | 328 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH | |
| 11 | HL_4V9F_012 | 4V9F | 0.2716 | 3 | 0 | LSU rRNA | G | 334 | U | 335 | A | 339 | A | 340 | C | 341 | C | 342 | cWW | tWH | |
| 12 | HL_4Y4O_114 | 4Y4O | 0.2584 | 3 | 2A | LSU rRNA | G | 327 | U | 328 | A | 332 | G | 333 | C | 334 | C | 335 | cWW | tWH | |
| 13 | HL_5TBW_007 | 5TBW | 0.2869 | 3 | 1 | LSU rRNA | G | 216 | U | 217 | A | 221 | A | 222 | U | 223 | C | 224 | cWW | tWH | |
| 14 | HL_4IOA_011 | 4IOA | 1.1977 | 3 | X | LSU rRNA | G | 338 | U | 339 | A | 343 | G | 344 | U | 345 | C | 346 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUAGAGUC | 3 |
| GUAUAGUC | 3 |
| GUUAUACUC | 2 |
| GUAAUAAUC | 1 |
| GUGACAGCC | 1 |
| GUGACAACC | 1 |
| GUGAAAGCC | 1 |
| GUGAGAAUC | 1 |
| GUGAGAGUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UAGAGU | 3 |
| UAUAGU | 3 |
| UUAUACU | 2 |
| UAAUAAU | 1 |
| UGACAGC | 1 |
| UGACAAC | 1 |
| UGAAAGC | 1 |
| UGAGAAU | 1 |
| UGAGAGU | 1 |
Release history
| Release | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: