#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 61-62-3
1 HL_7A0S_0127A0S0.57923T-loop with unstacked turnX LSU rRNAG338U339A343G344U345C346cWW
2 HL_4QJD_0044QJD0.38074T-loop with unstacked turnDTwister RNA sequenceG43U44A49G50C51C52cWWntWW
3 HL_4WF9_0124WF90.42823T-loop with unstacked turnX LSU rRNAG370U371A375A376U377C378cWWntWH
4 HL_4V9F_0124V9F0.42233T-loop with unstacked turn0 LSU rRNAG334U335A339A340C341C342cWWtWH
5 HL_7RQB_0127RQB0.40683T-loop with unstacked turn1A LSU rRNAG327U328A332G333C334C335cWWtWH
6 HL_5TBW_0075TBW0.40563T-loop with unstacked turn1 LSU rRNAG216U217A221A222U223C224cWWtWH
7 HL_5J7L_1445J7L0.36983T-loop with unstacked turnDA LSU rRNAG327U328A332G333C334C335cWWtWH
8 HL_4RGE_0034RGE0.35734T-loop with unstacked turnCtype-P1 twister ribozymeG29U30A35G36C37C38cWWtWH
9 HL_4OJI_0024OJI0.35734T-loop with unstacked turnARNA (52-MER)G23U24A29G30C31C32cWWtWH
10 HL_6DN2_0026DN20.19062T-loop with unstacked turnXRNA RIBOSWITCHG36U37A40G41U42C43cWWtWH
11 HL_3F2X_0023F2X0.18152T-loop with unstacked turnXFMN riboswitchG36U37A40G41U42C43cWWtWH
12 HL_5C45_0025C450.14582T-loop with unstacked turnXFMN RiboswitchG36U37A40G41U42C43cWWtWH
13 HL_5C45_0045C450.00002T-loop with unstacked turnYFMN RiboswitchG88U89A92G93U94C95cWWtWH
14 HL_3F2X_0053F2X0.06372T-loop with unstacked turnXFMN riboswitchG88U89A92G93U94C95cWWtWH
15 HL_6DN2_0046DN20.07362T-loop with unstacked turnYRNA (56-MER)G88U89A92G93U94C95cWWtWH
16 HL_4FRG_0034FRG0.14213T-loop with unstacked turnBcobalamin riboswitch aptamer domainG58U59A63C64U65C66cWWtWH
17 HL_4FRN_0074FRN0.20953T-loop with unstacked turnBCobalamin riboswitch aptamer domainG56U57A61C62U63C64cWWtWH

3D structures

Complete motif including flanking bases
SequenceCounts
GUAUAGUC3
GUAGAGUC3
GUCCCAAGCC2
GUUAUACUC2
GUGAGAGUC1
GUAAUAAUC1
GUGACAACC1
GUGAAAGCC1
GUGAGAAUC1
GUGACAGCC1
GUCCUAAGCC1
Non-Watson-Crick part of the motif
SequenceCounts
UAUAGU3
UAGAGU3
UCCCAAGC2
UUAUACU2
UGAGAGU1
UAAUAAU1
UGACAAC1
UGAAAGC1
UGAGAAU1
UGACAGC1
UCCUAAGC1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusUpdated, 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • T-loop with unstacked turn (17)
  • Basepair signature
    cWW-tWH-F-F
    Heat map statistics
    Min 0.06 | Avg 0.29 | Max 0.90
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