Motif HL_10453.1 Version HL_10453.1 of this group appears in releases 3.91 to 3.94
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5U3G_003 | 5U3G | 0.7809 | 2 | B | Guanidine-I riboswitch | G | 68 | A | 69 | A | 71 | A | 72 | A | 73 | A | 74 | C | 76 | cWW | tHH | |
| 2 | HL_7A0S_029 | 7A0S | 0.4916 | 1 | X | LSU rRNA | C | 1103 | G | 1104 | A | 1106 | A | 1107 | U | 1108 | A | 1109 | G | 1110 | cWW | ntSH | |
| 3 | HL_4V9F_049 | 4V9F | 0.6120 | 1 | GNRA related | 0 | LSU rRNA | C | 1916 | G | 1917 | A | 1919 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH |
| 4 | HL_6MPI_033 | 6MPI | 0.0000 | 2 | tRNA anticodon loop | X | tRNA ASL Escherichia coli Arg1 | G | 31 | RSP | 32 | C | 35 | G | 36 | A | 37 | A | 38 | C | 39 | cWW | |
| 5 | HL_8H0S_002 | 8H0S | 0.2205 | 2 | tRNA anticodon loop | Y | RNA (17-mer) | A | 31 | C | 32 | U | 35 | G | 36 | A | 37 | C | 38 | U | 39 | cWW | ncWB |
| 6 | HL_8H1B_001 | 8H1B | 0.2605 | 2 | tRNA anticodon loop | C | RNA (17-mer) | A | 31 | C | 32 | U | 35 | G | 36 | A | 37 | C | 38 | U | 39 | cWW | ncWB |
| 7 | HL_3OXE_001 | 3OXE | 0.5205 | 1 | A | domain II of glycine riboswitch | G | 17 | U | 19 | U | 20 | A | 21 | A | 22 | U | 23 | C | 24 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| ACUUUGACU | 2 |
| GAAAAAAGC | 1 |
| CGUAAUAG | 1 |
| CGUACAAG | 1 |
| G(RSP)U(I)CGAAC | 1 |
| GUUUAAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUUUGAC | 2 |
| AAAAAAG | 1 |
| GUAAUA | 1 |
| GUACAA | 1 |
| (RSP)U(I)CGAA | 1 |
| UUUAAU | 1 |
- Annotations
-
- (3)
- tRNA anticodon loop (3)
- GNRA related (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.19 | Avg 0.52 | Max 0.97
Coloring options: