Motif HL_10453.1 Version HL_10453.1 of this group appears in releases 3.91 to 3.94

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6
1	HL_5U3G_003	5U3G	0.7809	2		B	Guanidine-I riboswitch	G	68	A	69	A	71	A	72	A	73	A	74	C	76	cWW	tHH
2	HL_7A0S_029	7A0S	0.4916	1		X	LSU rRNA	C	1103	G	1104	A	1106	A	1107	U	1108	A	1109	G	1110	cWW	ntSH
3	HL_4V9F_049	4V9F	0.6120	1	GNRA related	0	LSU rRNA	C	1916	G	1917	A	1919	C	1920	A	1921	A	1922	G	1923	cWW	ntSH
4	HL_6MPI_033	6MPI	0.0000	2	tRNA anticodon loop	X	tRNA ASL Escherichia coli Arg1	G	31	RSP	32	C	35	G	36	A	37	A	38	C	39	cWW
5	HL_8H0S_002	8H0S	0.2205	2	tRNA anticodon loop	Y	RNA (17-mer)	A	31	C	32	U	35	G	36	A	37	C	38	U	39	cWW	ncWB
6	HL_8H1B_001	8H1B	0.2605	2	tRNA anticodon loop	C	RNA (17-mer)	A	31	C	32	U	35	G	36	A	37	C	38	U	39	cWW	ncWB
7	HL_3OXE_001	3OXE	0.5205	1		A	domain II of glycine riboswitch	G	17	U	19	U	20	A	21	A	22	U	23	C	24	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
ACUUUGACU	2
GAAAAAAGC	1
CGUAAUAG	1
CGUACAAG	1
G(RSP)U(I)CGAAC	1
GUUUAAUC	1

Non-Watson-Crick part of the motif

Sequence	Counts
CUUUGAC	2
AAAAAAG	1
GUAAUA	1
GUACAA	1
(RSP)U(I)CGAA	1
UUUAAU	1

Release history

Release	3.91	3.92	3.93	3.94
Date	2024-12-04	2025-01-01	2025-01-29	2025-02-26
Status	New id, 2 parents	Exact match	Exact match	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (3)
tRNA anticodon loop (3)
GNRA related (1)
Basepair signature: cWW-F-F-F-F-F
Heat map statistics: Min 0.19 | Avg 0.52 | Max 0.97

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