Motif HL_15603.2 Version HL_15603.2 of this group appears in releases 1.12 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 1-12 | 9-10 | 9-11 | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4C4W_001 | 4C4W | 0.3173 | 0 | D | TSKT-23 | C | 11 | A | 12 | U | 13 | U | 14 | G | 15 | C | 16 | A | 17 | C | 18 | U | 19 | C | 20 | C | 21 | G | 22 | cWW | |||
| 2 | HL_3UCZ_002 | 3UCZ | 0.3098 | 0 | R | Cyclic di-GMP-I riboswitch | C | 65 | A | 660 | U | 661 | U | 662 | G | 663 | C | 664 | A | 665 | C | 666 | U | 667 | C | 668 | C | 669 | G | 75 | cWW | |||
| 3 | HL_3CUN_002 | 3CUN | 0.2353 | 0 | C | RNA (92-MER) | C | 29 | A | 30 | U | 31 | U | 32 | G | 33 | C | 34 | A | 35 | C | 36 | U | 37 | C | 38 | C | 39 | G | 40 | cWW | |||
| 4 | HL_1URN_002 | 1URN | 0.0000 | 0 | Q | RNA (21-mer) | C | 5 | A | 6 | U | 7 | U | 8 | G | 9 | C | 10 | A | 11 | C | 12 | U | 13 | C | 14 | C | 15 | G | 16 | cWW | |||
| 5 | HL_1U6B_003 | 1U6B | 0.2974 | 0 | U1 small nuclear ribonucleoprotein A binding hairpin | B | 197-MER | C | 1002 | A | 1003 | U | 1004 | U | 1005 | G | 1006 | C | 1007 | A | 1008 | C | 1009 | U | 1010 | C | 1011 | C | 1012 | G | 1013 | cWW | ||
| 6 | HL_1VBY_002 | 1VBY | 0.2837 | 0 | B | Hepatitis delta virus ribozyme | C | 147 | A | 148 | U | 149 | U | 150 | G | 151 | C | 152 | A | 153 | C | 154 | U | 155 | C | 156 | C | 157 | G | 158 | cWW | ncSH | cSH | |
| 7 | HL_2NZ4_009 | 2NZ4 | 0.2949 | 0 | R | glmS ribozyme | C | 17|||A | A | 17|||B | U | 17|||C | U | 17|||D | G | 17|||E | C | 17|||F | A | 17|||G | C | 17|||H | U | 17|||I | C | 17|||J | C | 17|||K | G | 17|||L | cWW | |||
| 8 | HL_1M5O_003 | 1M5O | 0.3250 | 0 | E | Hairpin ribozyme | C | 35 | A | 36 | U | 37 | U | 38 | G | 39 | C | 40 | A | 41 | C | 42 | U | 43 | C | 44 | C | 45 | G | 46 | cWW | |||
| 9 | HL_3P49_001 | 3P49 | 0.6189 | 0 | A | Glycine riboswitch | C | 722 | A | 723 | U | 724 | U | 725 | G | 726 | C | 727 | A | 728 | C | 729 | U | 730 | C | 731 | C | 732 | G | 733 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAUUGCACUCCG | 9 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUUGCACUCC | 9 |
Release history
| Release | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|
| Date | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_15603.2 | Only in the parent motif |
|---|---|---|---|
| HL_15603.1 Compare | HL_3UCZ_002, HL_2NZ4_009, HL_1M5O_003, HL_1U6B_003, HL_1URN_002, HL_3CUN_002, HL_3P49_001, HL_1VBY_002 | HL_4C4W_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- (8)
- U1 small nuclear ribonucleoprotein A binding hairpin (1)
- Basepair signature
- cWW-R-R-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.21 | Avg 0.37 | Max 0.78
Coloring options: