Motif HL_16135.1 Version HL_16135.1 of this group appears in releases 3.62 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 4-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5X2G_002 | 5X2G | 0.8548 | 1 | B | sgRNA | G | 54 | U | 55 | U | 56 | U | 57 | G | 58 | C | 59 | G | 60 | G | 61 | G | 62 | C | 64 | cWW | ncSH | ||
| 2 | HL_3MJA_001 | 3MJA | 0.0000 | 0 | Anticodon loop related | B | Domain 3 of the cricket paralysis virus intergenic region IRES RNA | A | 6184 | U | 6185 | U | 6186 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | ||
| 3 | HL_4V83_139 | 4V83 | 0.2515 | 0 | CV | domain 3 of PSIC IGR IRES RNA | A | 6160 | U | 6161 | U | 6162 | A | 6163 | A | 6164 | G | 6165 | U | 6166 | G | 6167 | G | 6168 | U | 6169 | cWW | ncWW | ||
| 4 | HL_387D_001 | 387D | 0.5774 | 0 | A | RNA Pseudoknot | G | 4 | A | 5 | A | 6 | G | 7 | U | 8 | G | 9 | C | 10 | A | 11 | A | 12 | C | 13 | cWW | tWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUGCGGGAC | 1 |
| AUUAGGUAGU | 1 |
| AUUAAGUGGU | 1 |
| GAAGUGCAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUGCGGGA | 1 |
| UUAGGUAG | 1 |
| UUAAGUGG | 1 |
| AAGUGCAA | 1 |
Release history
| Release | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Anticodon loop related (1)
- Basepair signature
- cWW-R-R-R-R-R-R-R
- Heat map statistics
- Min 0.25 | Avg 0.51 | Max 0.90
Coloring options: