Motif HL_16416.1 Version HL_16416.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5NDH_001 | 5NDH | 0.1279 | 1 | Pseudoknot geometry with 3' bulge | A | G | 6 | A | 7 | C | 8 | G | 9 | C | 11 | cWW |
| 2 | HL_5VJ9_003 | 5VJ9 | 0.1262 | 1 | Pseudoknot geometry with 3' bulge | C | G | 6 | A | 7 | C | 8 | G | 9 | C | 11 | cWW |
| 3 | HL_5NDI_002 | 5NDI | 0.0000 | 1 | Pseudoknot geometry with 3' bulge | B | G | 8 | A | 9 | C | 10 | G | 11 | C | 13 | cWW |
| 4 | HL_8VTW_040 | 8VTW | 0.2966 | 1 | Pseudoknot geometry with 3' bulge | 1A | C | 1631 | A | 1631|||A | A | 1632 | G | 1633 | G | 1635 | cWW |
| 5 | HL_7A0S_073 | 7A0S | 0.3736 | 1 | Pseudoknot geometry with 3' bulge | X | U | 1647 | C | 1648 | A | 1649 | A | 1650 | G | 1652 | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACGAC | 3 |
| CAAGAG | 1 |
| UCAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACGA | 3 |
| AAGA | 1 |
| CAAU | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry with 3' bulge (5)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.11 | Avg 0.22 | Max 0.42
Coloring options: