Motif HL_16898.2 Version HL_16898.2 of this group appears in releases 3.33 to 3.53
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3DH3_003 | 3DH3 | 0.7873 | 1 | F | stem loop fragment of E. Coli 23S RNA | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW | |
| 2 | HL_3DH3_001 | 3DH3 | 0.7397 | 1 | E | stem loop fragment of E. Coli 23S RNA | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW | |
| 3 | HL_4LGT_001 | 4LGT | 0.4849 | 1 | E | stem-loop of 23S rRNA | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW | |
| 4 | HL_5J7L_156 | 5J7L | 0.0000 | 2 | DA | LSU rRNA | U | 779 | G | 780 | A | 782 | A | 783 | G | 785 | cWW | tSW | |
| 5 | HL_4V9F_025 | 4V9F | 0.0805 | 2 | 0 | LSU rRNA | U | 872 | G | 873 | A | 875 | A | 876 | G | 878 | cWW | tSW | |
| 6 | HL_6VMY_004 | 6VMY | 0.5597 | 2 | A | Cobalamin riboswitch | C | 287 | C | 288 | A | 290 | G | 291 | G | 293 | cWW | ncWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGAG | 3 |
| UGAAAGG | 2 |
| CCAAGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGA | 3 |
| GAAAG | 2 |
| CAAGC | 1 |
Release history
| Release | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: