Motif HL_55718.1 Version HL_55718.1 of this group appears in releases 1.5 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1FJG_018 | 1FJG | 0.6040 | 2 | Mini UNCG (H) | A | SSU rRNA | G | 838 | C | 840 | C | 848 | cWW |
| 2 | HL_1ZBH_001 | 1ZBH | 0.4937 | 3 | Mini UNCG | F | RNA (20-mer) | U | 11 | U | 14 | A | 16 | cWW |
| 3 | HL_3U5H_069 | 3U5H | 0.0000 | 1 | 5 | 25S rRNA | C | 3194 | U | 3196 | G | 3197 | cWW | |
| 4 | HL_3U5H_004 | 3U5H | 0.4546 | 2 | 5 | 25S rRNA | C | 132 | U | 134 | G | 136 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUCUC | 1 |
| UUUUCA | 1 |
| CUUG | 1 |
| CUUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UCU | 1 |
| UUUC | 1 |
| UU | 1 |
| UUC | 1 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_55718.1 | Only in the parent motif |
|---|---|---|---|
| HL_18798.1 Compare | HL_1ZBH_001, HL_3U5H_004 | HL_1FJG_018, HL_3U5H_069 | HL_4HXH_001, HL_4AQ7_002 |
| HL_81295.1 Compare | HL_1FJG_018 | HL_1ZBH_001, HL_3U5H_069, HL_3U5H_004 | |
| HL_75759.2 Compare | HL_3U5H_069 | HL_1FJG_018, HL_1ZBH_001, HL_3U5H_004 | HL_1S72_041, HL_4A1B_039, HL_3U5F_007, HL_3V2F_037, HL_3V2F_009, HL_2QBG_041, HL_3U5H_040, HL_4IOA_038, HL_3U5H_072 |
Children motifs
| Child motif | Common motif instances | Only in HL_55718.1 | Only in the child motif |
|---|---|---|---|
| HL_25878.1 Compare | HL_1FJG_018, HL_3U5H_069, HL_3U5H_004 | HL_1ZBH_001 | HL_4P9R_001, HL_4CUV_004 |
| HL_64209.1 Compare | HL_1ZBH_001 | HL_1FJG_018, HL_3U5H_069, HL_3U5H_004 |
- Annotations
-
- (2)
- Mini UNCG (H) (1)
- Mini UNCG (1)
- Basepair signature
- cWW
- Heat map statistics
- Min 0.45 | Avg 0.49 | Max 0.88
Coloring options: