RNA 3D Hub //

Motif HL_19210.2 Version HL_19210.2 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 9 101-102-9
1 HL_7OSM_1177OSM0.86320ASIT tRNAG53U54U55C56G57A58U59U60C61C62cWWcWW
2 HL_5J7L_1615J7L0.16171DA LSU rRNAC1064U1065U1066A1067G1068A1069G1071C1072A1073G1074cWW
3 HL_6PRV_0016PRV0.07351A LSU rRNAC1064U1065U1066A1067G1068A1069G1071C1072A1073G1074cWW
4 HL_1MMS_0011MMS0.00001C23S RIBOSOMAL RNAC1064U1065U1066A1067G1068A1069G1071C1072A1073G1074cWW
5 HL_5D8H_0015D8H0.06611A LSU rRNAC1174U1175U1176A1177G1178A1179G1181C1182A1183G1184cWW
6 HL_8P9A_1398P9A0.32801AR LSU rRNAC1239A1240U1241G1242G1243A1244G1246U1247C1248G1249ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUAGAAGCAG4
GUUCGAUUCC1
CAUGGAAGUCG1
Non-Watson-Crick part of the motif
SequenceCounts
UUAGAAGCA4
UUCGAUUC1
AUGGAAGUC1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusUpdated, 2 parentsExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (6)
    • Basepair signature
    cWW-F-F-F-F-F-F-F-F
    Heat map statistics
    Min 0.07 | Avg 0.36 | Max 0.93
    Help

    Coloring options:

    HL_7OSM_117:HL_7OSM_117 = 0HL_7OSM_117:HL_5J7L_161 = 0.826HL_7OSM_117:HL_6PRV_001 = 0.8805HL_7OSM_117:HL_1MMS_001 = 0.8632HL_7OSM_117:HL_5D8H_001 = 0.8884HL_7OSM_117:HL_8P9A_139 = 0.9337HL_5J7L_161:HL_7OSM_117 = 0.826HL_5J7L_161:HL_5J7L_161 = 0HL_5J7L_161:HL_6PRV_001 = 0.1789HL_5J7L_161:HL_1MMS_001 = 0.1617HL_5J7L_161:HL_5D8H_001 = 0.1738HL_5J7L_161:HL_8P9A_139 = 0.2936HL_6PRV_001:HL_7OSM_117 = 0.8805HL_6PRV_001:HL_5J7L_161 = 0.1789HL_6PRV_001:HL_6PRV_001 = 0HL_6PRV_001:HL_1MMS_001 = 0.0735HL_6PRV_001:HL_5D8H_001 = 0.0898HL_6PRV_001:HL_8P9A_139 = 0.3419HL_1MMS_001:HL_7OSM_117 = 0.8632HL_1MMS_001:HL_5J7L_161 = 0.1617HL_1MMS_001:HL_6PRV_001 = 0.0735HL_1MMS_001:HL_1MMS_001 = 0HL_1MMS_001:HL_5D8H_001 = 0.0661HL_1MMS_001:HL_8P9A_139 = 0.328HL_5D8H_001:HL_7OSM_117 = 0.8884HL_5D8H_001:HL_5J7L_161 = 0.1738HL_5D8H_001:HL_6PRV_001 = 0.0898HL_5D8H_001:HL_1MMS_001 = 0.0661HL_5D8H_001:HL_5D8H_001 = 0HL_5D8H_001:HL_8P9A_139 = 0.3098HL_8P9A_139:HL_7OSM_117 = 0.9337HL_8P9A_139:HL_5J7L_161 = 0.2936HL_8P9A_139:HL_6PRV_001 = 0.3419HL_8P9A_139:HL_1MMS_001 = 0.328HL_8P9A_139:HL_5D8H_001 = 0.3098HL_8P9A_139:HL_8P9A_139 = 0HL_7OSM_117HL_5J7L_161HL_6PRV_001HL_1MMS_001HL_5D8H_001HL_8P9A_139Discrepancy0.000.200.400.600.80
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