Motif HL_20743.2 Version HL_20743.2 of this group appears in releases 3.25 to 3.76
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 4-6 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3SKI_001 | 3SKI | 0.8068 | 1 | A | RNA (68-MER) | C | 39 | A | 40 | U | 41 | A | 42 | A | 43 | G | 45 | G | 46 | G | 47 | cWW | ncsS | |
| 2 | HL_3SKL_004 | 3SKL | 0.7847 | 1 | B | RNA (66-MER) | C | 38 | A | 39 | U | 40 | A | 41 | A | 42 | G | 44 | G | 45 | G | 46 | cWW | ||
| 3 | HL_3RKF_007 | 3RKF | 0.1545 | 1 | C | Guanine riboswitch | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | A | 37 | G | 38 | C | 39 | cWW | ||
| 4 | HL_5KPY_001 | 5KPY | 0.0000 | 1 | A | 5-hydroxytryptophan RNA aptamer | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs | |
| 5 | HL_1Y27_001 | 1Y27 | 0.1296 | 1 | X | Purine riboswitch | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs | |
| 6 | HL_6P2H_001 | 6P2H | 0.1463 | 1 | A | RNA (69-MER) | A | 31 | A | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | U | 39 | cWW | ncSs | |
| 7 | HL_4FEN_001 | 4FEN | 0.1656 | 1 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | G | 31 | G | 32 | A | 33 | U | 34 | A | 35 | G | 37 | G | 38 | C | 39 | cWW | ncSs |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUAUGGC | 3 |
| CAUAAUGGG | 2 |
| GGAUAUAGC | 1 |
| AAAUAUGGU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUAUGG | 3 |
| AUAAUGG | 2 |
| GAUAUAG | 1 |
| AAUAUGG | 1 |
Release history
| Release | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 | 3.32 | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 | 3.62 | 3.63 | 3.64 | 3.65 | 3.66 | 3.67 | 3.68 | 3.69 | 3.70 | 3.71 | 3.72 | 3.73 | 3.74 | 3.75 | 3.76 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 | 2020-05-27 | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 | 2022-10-12 | 2022-11-09 | 2022-12-07 | 2023-01-04 | 2023-02-01 | 2023-03-01 | 2023-03-29 | 2023-04-26 | 2023-05-24 | 2023-06-21 | 2023-07-19 | 2023-08-16 | 2023-09-13 | 2023-10-11 | 2023-11-08 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-R-cSS-R-R
- Heat map statistics
- Min 0.11 | Avg 0.40 | Max 0.85
Coloring options: