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Motif HL_22584.1 Version HL_22584.1 of this group appears in releases 3.87 to 3.87

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-32-4
1 HL_6OL3_0016OL30.47832Other HLC VA RNAG64A66C68C69C70cWWntSW
2 HL_8DK7_0018DK70.13082Fab BL3-6 binding hairpin with tSWCRNA (34-MER)G13A15C17A18C19cWWtSW
3 HL_3IVK_0033IVK0.15832Fab BL3-6 binding hairpin with tSWMclass I ligase productG59A61C63A64C65cWWtSW
4 HL_8VM8_0038VM80.15142Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG63A65C67A68C69cWWtSW
5 HL_4KZD_0014KZD0.15072Fab BL3-6 binding hairpin with tSWRRNA (84-MER)G37A39C41A42C43cWWtSW
6 HL_6DB9_0016DB90.14662Fab BL3-6 binding hairpin with tSWRRNA (60-MER)G23A25C27A28C29cWWtSW
7 HL_8D29_0028D290.11712Fab BL3-6 binding hairpin with tSWFRNA (34-MER)G13A15C17A18C19cWWtSW
8 HL_8D29_0038D290.11862Fab BL3-6 binding hairpin with tSWJRNA (34-MER)G13A15C17A18C19cWWtSW
9 HL_8VM9_0068VM90.12002Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG57A59C61A62C63cWWtSW
10 HL_8T29_0018T290.10532Fab BL3-6 binding hairpin with tSWRRNA (90-MER)G35A37C39A40C41cWWtSW
11 HL_8VMB_0018VMB0.10182Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG18A20C22A23C24cWWntSW
12 HL_8DP3_0018DP30.00002Fab BL3-6 binding hairpin with tSWREnterovirus 5' cloverleaf cis-acting replication elementG20A22C24A25C26cWWtSW
13 HL_8VMA_0038VMA0.09162Fab BL3-6 binding hairpin with tSWCEnterovirus 5' cloverleaf cis-acting replication elementG60A62C64A65C66cWWtSW
14 HL_7MLX_0027MLX0.07722Fab BL3-6 binding hairpin with tSWRRNA (65-MER)G40A42C44A45C46cWWtSW
15 HL_8D29_0018D290.08192Fab BL3-6 binding hairpin with tSWCRNA (34-MER)G13A15C17A18C19cWWtSW
16 HL_6X5M_0026X5M0.10632Fab BL3-6 binding hairpin with tSWrggPAN RNA (39-MER)G14A16C18A19C20cWWtSW
17 HL_7SZU_0017SZU0.11332Fab BL3-6 binding hairpin with tSWRRNA aptamerG35A37C39A40C41cWWtSW
18 HL_8UIW_0018UIW0.08962Fab BL3-6 binding hairpin with tSWNazaaromatic riboswitch aptamer (yjdF RNA)G29A31C33A34C35cWWtSW
19 HL_7A0S_0617A0S0.49092X LSU rRNAC2530U2531U2534C2535G2536cWW
20 HL_4WF9_0584WF90.48022X LSU rRNAC2578U2579U2582C2583G2584cWW
21 HL_5TBW_0635TBW0.545821 LSU rRNAU2920U2921U2924C2925A2926cWW
22 HL_8C3A_0648C3A0.564121 LSU rRNAU2892U2893U2896C2897A2898cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAAACAC17
CUGUUCG2
UUGUUCA2
GAACCCC1
Non-Watson-Crick part of the motif
SequenceCounts
AAACA17
UGUUC4
AACCC1

Release history

Release3.87
Date2024-08-14
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Fab BL3-6 binding hairpin with tSW (17)
  • (4)
  • Other HL (1)
    • Basepair signature
    cWW-tSW-F
    Heat map statistics
    Min 0.03 | Avg 0.27 | Max 0.95
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