Motif HL_23827.1 Version HL_23827.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-6 | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_8KAL_008 | 8KAL | 0.8527 | 1 | A | RNA (98-MER) | C | 30 | U | 31 | A | 32 | G | 33 | A | 35 | A | 36 | U | 37 | A | 38 | G | 39 | cWW | ncWW | |
2 | HL_8C3A_224 | 8C3A | 0.4534 | 3 | CM | SSU rRNA | A | 1537 | U | 1538 | U | 1539 | G | 1540 | A | 1542 | A | 1543 | U | 1545 | U | 1547 | U | 1548 | cWW | ncWH | tWH |
3 | HL_4V88_219 | 4V88 | 0.4442 | 3 | A6 | SSU rRNA | A | 1550 | U | 1551 | U | 1552 | G | 1553 | A | 1555 | A | 1556 | U | 1558 | U | 1560 | U | 1561 | cWW | ncWH | tWH |
4 | HL_4V9I_040 | 4V9I | 0.4017 | 2 | AY | tRNA | C | 52 | A | 53 | A | 54 | C | 55 | C | 57 | U | 58 | C | 60 | C | 61 | G | 62 | cWW | ncWW | |
5 | HL_4WT8_137 | 4WT8 | 0.4416 | 2 | C3 | tRNA | G | 52 | G | 53 | U | 54 | U | 55 | G | 57 | A | 58 | U | 60 | C | 61 | C | 62 | cWW | ||
6 | HL_4V7M_040 | 4V7M | 0.4020 | 2 | AY | tRNA | G | 51 | G | 52 | U | 53 | U | 54 | G | 56 | A | 57 | U | 59 | C | 60 | C | 61 | cWW | ||
7 | HL_5E81_236 | 5E81 | 0.2627 | 2 | 2K | tRNA | G | 53 | G | 54 | 5MU | 55 | PSU | 56 | A | 58 | A | 59 | U | 61 | C | 62 | C | 63 | cWW | ncWW | tWH |
8 | HL_4TUE_218 | 4TUE | 0.0000 | 2 | QV | tRNA | G | 52 | G | 53 | U | 54 | U | 55 | A | 57 | A | 58 | U | 60 | C | 61 | C | 62 | cWW | ncWW | tWH |
9 | HL_5EL4_223 | 5EL4 | 0.3357 | 2 | 3L | tRNA | G | 52 | G | 53 | U | 54 | U | 55 | G | 57 | A | 58 | U | 60 | C | 61 | C | 62 | ncWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GGUUCGAAUCC | 2 |
CUAGAAAUAG | 1 |
AUUGUAAUUGUU | 1 |
AUUGUAAUUAUU | 1 |
CAACUCUACCG | 1 |
GGUUCGAUUCC | 1 |
GG(5MU)(PSU)CAAAUCC | 1 |
GGUUCAAAUCC | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUUCGAAUC | 2 |
UAGAAAUA | 1 |
UUGUAAUUGU | 1 |
UUGUAAUUAU | 1 |
AACUCUACC | 1 |
GUUCGAUUC | 1 |
G(5MU)(PSU)CAAAUC | 1 |
GUUCAAAUC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.10 | Avg 0.47 | Max 0.91
Coloring options: