#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 4 5 6 7 8 91-92-83-6
1 HL_8KAL_0088KAL0.85271ARNA (98-MER)C30U31A32G33A35A36U37A38G39cWWncWW
2 HL_8C3A_2248C3A0.45343CM SSU rRNAA1537U1538U1539G1540A1542A1543U1545U1547U1548cWWncWHtWH
3 HL_4V88_2194V880.44423A6 SSU rRNAA1550U1551U1552G1553A1555A1556U1558U1560U1561cWWncWHtWH
4 HL_4V9I_0404V9I0.40172AY tRNAC52A53A54C55C57U58C60C61G62cWWncWW
5 HL_4WT8_1374WT80.44162C3 tRNAG52G53U54U55G57A58U60C61C62cWW
6 HL_4V7M_0404V7M0.40202AY tRNAG51G52U53U54G56A57U59C60C61cWW
7 HL_5E81_2365E810.262722K tRNAG53G545MU55PSU56A58A59U61C62C63cWWncWWtWH
8 HL_4TUE_2184TUE0.00002QV tRNAG52G53U54U55A57A58U60C61C62cWWncWWtWH
9 HL_5EL4_2235EL40.335723L tRNAG52G53U54U55G57A58U60C61C62ncWW

3D structures

Complete motif including flanking bases
SequenceCounts
GGUUCGAAUCC2
CUAGAAAUAG1
AUUGUAAUUGUU1
AUUGUAAUUAUU1
CAACUCUACCG1
GGUUCGAUUCC1
GG(5MU)(PSU)CAAAUCC1
GGUUCAAAUCC1
Non-Watson-Crick part of the motif
SequenceCounts
GUUCGAAUC2
UAGAAAUA1
UUGUAAUUGU1
UUGUAAUUAU1
AACUCUACC1
GUUCGAUUC1
G(5MU)(PSU)CAAAUC1
GUUCAAAUC1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (9)
  • Basepair signature
    cWW-F-F-F-F-F-F-F
    Heat map statistics
    Min 0.10 | Avg 0.47 | Max 0.91
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