Motif HL_25124.2 Version HL_25124.2 of this group appears in releases 1.9 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3DH3_003 | 3DH3 | 0.1801 | 1 | UNCG | F | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 2 | HL_3DH3_001 | 3DH3 | 0.0000 | 1 | UNCG | E | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 3 | HL_4LGT_001 | 4LGT | 0.6258 | 1 | UNCG | E | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 4 | HL_4A1B_069 | 4A1B | 0.8257 | 3 | 1 | C | 3202 | G | 3203 | A | 3207 | A | 3208 | G | 3209 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGAG | 3 |
| CGAAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGA | 3 |
| GAAAAA | 1 |
Release history
| Release | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 | 1.16 | 1.17 | 1.18 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 | 2014-07-26 | 2014-09-06 | 2014-10-09 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_25124.2 | Only in the parent motif |
|---|---|---|---|
| HL_25124.1 Compare | HL_4A1B_069, HL_3DH3_003, HL_3DH3_001 | HL_4LGT_001 |
Children motifs
This motif has no children motifs.- Annotations
-
- UNCG (3)
- (1)
- Basepair signature
- cWW-tSW-R
- Heat map statistics
- Min 0.18 | Avg 0.47 | Max 0.84
Coloring options: