Motif HL_25124.1 Version HL_25124.1 of this group appears in releases 0.3 to 1.8
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3DH3_001 | 3DH3 | 0.2472 | 0 | UNCG | E | C | 2594 | G | 2595 | U | 2596 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 2 | HL_3DH3_003 | 3DH3 | 0.0000 | 0 | UNCG | F | C | 2594 | G | 2595 | U | 2596 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
| 3 | HL_4A1B_069 | 4A1B | 0.9680 | 2 | 1 | C | 3202 | G | 3203 | A | 3204 | A | 3207 | A | 3208 | G | 3209 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUGAG | 2 |
| CGAAAAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUGA | 2 |
| GAAAAA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_25124.1 | Only in the parent motif |
|---|---|---|---|
| HL_60345.1 Compare | HL_3DH3_003, HL_3DH3_001 | HL_4A1B_069 | HL_1S72_025, HL_3DH3_004, HL_3DH3_006 |
Children motifs
| Child motif | Common motif instances | Only in HL_25124.1 | Only in the child motif |
|---|---|---|---|
| HL_25124.2 Compare | HL_4A1B_069, HL_3DH3_003, HL_3DH3_001 | HL_4LGT_001 |
- Annotations
-
- UNCG (2)
- (1)
- Basepair signature
- cWW-tSW-R-R
- Heat map statistics
- Min 0.25 | Avg 0.49 | Max 0.98
Coloring options: