#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name for chain 1 2 3 41-42-33-4
1 HL_3AMU_0013AMU0.39998tRNA D-loopB tRNAU13A14A21|||CG22cWWncWS
2 HL_2ZUE_0012ZUE0.71728tRNA D-loopB tRNAU913A914A921G922cWWcWS
3 HL_1J1U_0011J1U0.70497tRNA D-loopB tRNAC513A514A522G523cWWncWS
4 HL_6JXM_0016JXM0.19525tRNA D-loopB tRNAC13A14A20G21cWWncWS
5 HL_3EPH_0013EPH0.00005tRNA D-loopE tRNAC13A14A21G22cWWcWS
6 HL_2AZX_0042AZX0.15105tRNA D-loopD tRNAC513A514A521G522cWWcWS
7 HL_3TUP_0013TUP0.21866tRNA D-loopT tRNAC13A14A21G22cWWncWS
8 HL_3FOZ_0043FOZ0.28186tRNA D-loopD tRNAC13A14A21G22cWWcWS
9 HL_7MRL_0017MRL0.21636tRNA D-loopA tRNAC13A14A21G22cWWncWS
10 HL_7LYF_0017LYF0.22116tRNA D-loopADengue virus SLAC13A14A21G22cWWncWS
11 HL_8SP9_0018SP90.28516tRNA D-loopCEnterovirus 5' cloverleaf cis-acting replication elementC13A14A21G22cWWncWS
12 HL_5AXM_0015AXM0.45916tRNA D-loopP tRNAC13A14A21G22cWWncWS
13 HL_4TUE_0334TUE0.24457tRNA D-loopQV tRNAC12A13A21G22cWWcWS
14 HL_6CFJ_1066CFJ0.74917tRNA D-loop1x tRNAC13A14A21G22cWWcWS
15 HL_5B63_0035B630.25107tRNA D-loopD tRNAC913A914A922G923cWWncWS
16 HL_4WT8_2154WT80.63537tRNA D-loopD4 tRNAC13A14A22G23cWWncWS
17 HL_3AL0_0013AL00.27395tRNA D-loopE tRNAU13A14A21G22cWWcWS
18 HL_4V9Q_2134V9Q0.67987tRNA D-loopDV tRNAC13A14A21G22cWWncSH
19 HL_4M4O_0014M4O1.16901UNCG relatedBRNA (59-MER)C32U33A35G36cWWcWS
20 HL_4M6D_0044M6D1.16271UNCG relatedHaptamerC32U33A35G36cWWcWS

3D structures

Complete motif including flanking bases
SequenceCounts
CAGCCUGGUAG5
CAGUCGGUAG4
CAGUGGUAG2
CUUAG2
UAGCCAGGUCAG1
UAGCCAGGACAG1
CAAUGGUAG1
CAGUUGGUAG1
CAGUUGGGAG1
CAAUUGGAUAG1
UAACGGUAG1
Non-Watson-Crick part of the motif
SequenceCounts
AGCCUGGUA5
AGUCGGUA4
AGUGGUA2
UUA2
AGCCAGGUCA1
AGCCAGGACA1
AAUGGUA1
AGUUGGUA1
AGUUGGGA1
AAUUGGAUA1
AACGGUA1

Release history

Release3.773.783.79
Date2023-12-062024-01-032024-01-03
StatusNew id, > 2 parentsExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • tRNA D-loop (18)
  • UNCG related (2)
  • Basepair signature
    cWW-cWS
    Heat map statistics
    Min 0.08 | Avg 0.48 | Max 1.32
    Help

    Coloring options:

    Copyright 2026 BGSU RNA group. Page generated in 0.3985 s