Motif HL_29960.2 Version HL_29960.2 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_7LYF_002 | 7LYF | 0.3626 | 2 | UNCG variation | A | tRNA | A | 59 | C | 60 | G | 62 | A | 63 | U | 65 | cWW | |
2 | HL_3IGI_008 | 3IGI | 0.1745 | 1 | UNCG | A | Group IIC intron | G | 338 | U | 339 | C | 341 | G | 342 | C | 343 | cWW | tSW |
3 | HL_6CK5_001 | 6CK5 | 0.1729 | 1 | UNCG | A | Guanidine-I riboswitch | A | 27 | U | 28 | U | 30 | G | 31 | U | 32 | cWW | tSW |
4 | HL_3U4M_001 | 3U4M | 0.1359 | 1 | UNCG | B | LSU rRNA | C | 2143 | U | 2144 | C | 2146 | G | 2147 | G | 2148 | cWW | tSW |
5 | HL_2HW8_001 | 2HW8 | 0.1068 | 1 | UNCG | B | 36-MER | C | 15 | U | 16 | C | 18 | G | 19 | G | 20 | cWW | tSW |
6 | HL_6DLR_002 | 6DLR | 0.1540 | 1 | UNCG | A | Guanidine-I riboswitch | A | 61 | U | 62 | C | 64 | G | 65 | U | 66 | cWW | tSW |
7 | HL_6KYV_004 | 6KYV | 0.1720 | 1 | UNCG | G | RNA (22-mer) | C | 9 | U | 10 | C | 12 | G | 13 | G | 14 | cWW | tSW |
8 | HL_7A0S_042 | 7A0S | 0.1815 | 1 | UNCG | X | LSU rRNA | C | 1708 | U | 1709 | C | 1711 | G | 1712 | G | 1713 | cWW | tSW |
9 | HL_4WF9_040 | 4WF9 | 0.1620 | 1 | UNCG | X | LSU rRNA | C | 1735 | U | 1736 | C | 1738 | G | 1739 | G | 1740 | cWW | tSW |
10 | HL_5J7L_009 | 5J7L | 0.1590 | 1 | UNCG | AA | SSU rRNA | C | 342 | U | 343 | C | 345 | G | 346 | G | 347 | cWW | tSW |
11 | HL_5TBW_043 | 5TBW | 0.1627 | 1 | UNCG | 1 | LSU rRNA | C | 1923 | U | 1924 | C | 1926 | G | 1927 | G | 1928 | cWW | tSW |
12 | HL_8C3A_043 | 8C3A | 0.1139 | 1 | UNCG | 1 | LSU rRNA | C | 1919 | U | 1920 | C | 1922 | G | 1923 | G | 1924 | cWW | tSW |
13 | HL_1KUQ_001 | 1KUQ | 0.1335 | 1 | UNCG | B | 16S RIBOSOMAL RNA FRAGMENT | C | 8 | U | 9 | C | 11 | G | 12 | G | 13 | cWW | tSW |
14 | HL_4V9F_044 | 4V9F | 0.1022 | 1 | UNCG | 0 | LSU rRNA | C | 1769 | U | 1770 | C | 1772 | G | 1773 | G | 1774 | cWW | tSW |
15 | HL_8ID2_001 | 8ID2 | 0.0941 | 1 | UNCG | C | RNA (24-mer) | G | 10 | U | 11 | C | 13 | G | 14 | C | 15 | cWW | tSW |
16 | HL_4LFB_009 | 4LFB | 0.1150 | 1 | UNCG | A | SSU rRNA | C | 342 | U | 343 | C | 345 | G | 346 | G | 347 | cWW | tSW |
17 | HL_6QN3_003 | 6QN3 | 0.1160 | 1 | UNCG | B | Glutamine-II | C | 9 | U | 10 | C | 12 | G | 13 | G | 14 | cWW | tSW |
18 | HL_6SY6_001 | 6SY6 | 0.0954 | 1 | UNCG | D | RNA (36-MER) | C | 19 | U | 20 | C | 22 | G | 23 | G | 24 | cWW | tSW |
19 | HL_5LYS_002 | 5LYS | 0.0878 | 1 | UNCG | B | 7SK RNA | C | 48 | U | 48|||A | C | 48|||C | G | 48|||D | G | 60 | cWW | tSW |
20 | HL_4JF2_003 | 4JF2 | 0.1005 | 1 | UNCG | A | PreQ1-II Riboswitch | C | 60 | U | 61 | C | 63 | G | 64 | G | 65 | cWW | tSW |
21 | HL_5Y85_004 | 5Y85 | 0.0000 | 1 | UNCG | D | DNA/RNA (50-MER) | C | 28 | U | 29 | C | 31 | G | 32 | G | 33 | cWW | tSW |
22 | HL_4LFB_031 | 4LFB | 0.1127 | 1 | UNCG | A | SSU rRNA | C | 1449 | U | 1450 | C | 1452 | G | 1453 | G | 1454 | cWW | tSW |
23 | HL_6QN3_001 | 6QN3 | 0.1041 | 1 | UNCG | A | Glutamine-II | C | 9 | U | 10 | C | 12 | G | 13 | G | 14 | cWW | tSW |
24 | HL_4PDB_001 | 4PDB | 0.1023 | 1 | UNCG | I | SELEX RNA aptamer | C | 17 | U | 18 | C | 20 | G | 21 | G | 22 | cWW | tSW |
25 | HL_5D5L_003 | 5D5L | 0.0863 | 1 | UNCG | A | PreQ1-II riboswitch | C | 60 | U | 61 | C | 63 | G | 64 | G | 65 | cWW | tSW |
26 | HL_8F5G_001 | 8F5G | 0.0987 | 1 | UNCG | D | RNA | C | 12 | U | 13 | C | 15 | G | 16 | G | 17 | cWW | tSW |
27 | HL_7KKV_002 | 7KKV | 0.1216 | 1 | UNCG | B | OLE* RNA | C | 517 | U | 518 | C | 520 | G | 521 | G | 522 | cWW | tSW |
28 | HL_1UN6_003 | 1UN6 | 0.1102 | 1 | UNCG | F | 5S RIBOSOMAL RNA | C | 15 | U | 16 | C | 18 | G | 19 | G | 64 | cWW | tSW |
29 | HL_4AY2_001 | 4AY2 | 0.1248 | 1 | UNCG | C | 5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP *CP*GP*CP*GP*CP*C)-3' | C | 8 | U | 9 | C | 11 | G | 12 | G | 13 | cWW | tSW |
30 | HL_8C3A_202 | 8C3A | 0.0960 | 1 | UNCG | CM | SSU rRNA | C | 412 | C | 413 | A | 415 | G | 416 | G | 417 | cWW | tSW |
31 | HL_6CZR_080 | 6CZR | 0.1168 | 1 | UNCG | 1a | SSU rRNA | C | 338 | U | 339 | C | 341 | G | 342 | G | 343 | cWW | tSW |
32 | HL_4V88_196 | 4V88 | 0.1157 | 1 | UNCG | A6 | SSU rRNA | C | 414 | C | 415 | A | 417 | G | 418 | G | 419 | cWW | tSW |
33 | HL_4PMI_004 | 4PMI | 0.1099 | 1 | UNCG | A | Rev-Response-Element RNA | C | 53 | U | 54 | C | 56 | G | 57 | G | 58 | cWW | tSW |
34 | HL_7OAX_001 | 7OAX | 0.1000 | 1 | UNCG | A | Chili RNA Aptamer | G | 21 | U | 22 | C | 24 | G | 25 | C | 26 | cWW | tSW |
35 | HL_1I6U_001 | 1I6U | 0.1603 | 1 | UNCG | C | 16S RRNA FRAGMENT | C | 16 | U | 17 | C | 19 | G | 20 | G | 21 | cWW | tSW |
36 | HL_8VTW_041 | 8VTW | 0.1026 | 1 | UNCG | 1A | LSU rRNA | C | 1691 | U | 1692 | C | 1694 | G | 1695 | G | 1696 | cWW | tSW |
37 | HL_5J7L_175 | 5J7L | 0.1182 | 1 | UNCG | DA | LSU rRNA | C | 1691 | U | 1692 | C | 1694 | G | 1695 | G | 1696 | cWW | tSW |
38 | HL_4LFB_011 | 4LFB | 0.1068 | 1 | UNCG | A | SSU rRNA | C | 419 | U | 420 | C | 422 | G | 423 | G | 424 | cWW | tSW |
39 | HL_5J7L_011 | 5J7L | 0.1045 | 1 | UNCG | AA | SSU rRNA | C | 419 | U | 420 | C | 422 | G | 423 | G | 424 | cWW | tSW |
40 | HL_5J7L_030 | 5J7L | 0.1182 | 1 | UNCG | AA | SSU rRNA | C | 1449 | U | 1450 | C | 1452 | G | 1453 | G | 1454 | cWW | tSW |
41 | HL_7L0Z_001 | 7L0Z | 0.1217 | 1 | UNCG | G | RNA (69-MER) | G | 30 | U | 31 | C | 33 | G | 34 | C | 35 | cWW | tSW |
42 | HL_8T29_002 | 8T29 | 0.1510 | 1 | UNCG | R | RNA (90-MER) | C | 58 | U | 59 | C | 61 | G | 62 | G | 63 | cWW | tSW |
43 | HL_5J7L_171 | 5J7L | 0.1848 | 1 | UNCG | DA | LSU rRNA | C | 1533 | U | 1534 | C | 1536 | G | 1537 | G | 1538 | cWW | tSW |
44 | HL_7RGU_005 | 7RGU | 0.2000 | 1 | UNCG | F | Modified SL3 of RocR | C | 10 | U | 11 | C | 13 | G | 14 | G | 15 | ncWW | tSW |
45 | HL_1NBS_006 | 1NBS | 0.2077 | 1 | UNCG | B | RNase P class B | C | 152 | U | 153 | C | 155 | G | 156 | G | 157 | cWW | tSW |
46 | HL_5ML7_002 | 5ML7 | 0.3043 | 1 | UNCG | B | 23S ribosomal RNA | C | 2187 | G | 2188 | U | 2190 | A | 2191 | G | 2192 | cWW | |
47 | HL_6DME_002 | 6DME | 0.2692 | 1 | UNCG | A | ppGpp Riboswitch | C | 57 | U | 58 | C | 60 | G | 61 | G | 62 | cWW | |
48 | HL_4LGT_001 | 4LGT | 0.2899 | 1 | UNCG | E | stem-loop of 23S rRNA | C | 2594 | G | 2595 | G | 2597 | A | 2598 | G | 2599 | cWW | tSW |
49 | HL_6DLR_001 | 6DLR | 0.6036 | 1 | UNCG variation | A | Guanidine-I riboswitch | C | 27 | U | 28 | C | 30 | G | 31 | G | 32 | cWW | tSW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CUUCGG | 31 |
CUACGG | 6 |
GUUCGC | 3 |
CCAAGG | 2 |
ACAGAUU | 1 |
AUUUGU | 1 |
CUCCGG | 1 |
AUUCGU | 1 |
GUACGC | 1 |
CGCUAG | 1 |
CGUGAG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUCG | 35 |
UACG | 7 |
CAAG | 2 |
CAGAU | 1 |
UUUG | 1 |
UCCG | 1 |
GCUA | 1 |
GUGA | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- UNCG (47)
- UNCG variation (2)
- Basepair signature
- cWW-tSW-F
- Heat map statistics
- Min 0.07 | Avg 0.21 | Max 0.99
Coloring options: