#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-4
1 HL_7LYF_0027LYF0.36262UNCG variationA tRNAA59C60G62A63U65cWW
2 HL_3IGI_0083IGI0.17451UNCGAGroup IIC intronG338U339C341G342C343cWWtSW
3 HL_6CK5_0016CK50.17291UNCGAGuanidine-I riboswitchA27U28U30G31U32cWWtSW
4 HL_3U4M_0013U4M0.13591UNCGB LSU rRNAC2143U2144C2146G2147G2148cWWtSW
5 HL_2HW8_0012HW80.10681UNCGB36-MERC15U16C18G19G20cWWtSW
6 HL_6DLR_0026DLR0.15401UNCGAGuanidine-I riboswitchA61U62C64G65U66cWWtSW
7 HL_6KYV_0046KYV0.17201UNCGGRNA (22-mer)C9U10C12G13G14cWWtSW
8 HL_7A0S_0427A0S0.18151UNCGX LSU rRNAC1708U1709C1711G1712G1713cWWtSW
9 HL_4WF9_0404WF90.16201UNCGX LSU rRNAC1735U1736C1738G1739G1740cWWtSW
10 HL_5J7L_0095J7L0.15901UNCGAA SSU rRNAC342U343C345G346G347cWWtSW
11 HL_5TBW_0435TBW0.16271UNCG1 LSU rRNAC1923U1924C1926G1927G1928cWWtSW
12 HL_8C3A_0438C3A0.11391UNCG1 LSU rRNAC1919U1920C1922G1923G1924cWWtSW
13 HL_1KUQ_0011KUQ0.13351UNCGB16S RIBOSOMAL RNA FRAGMENTC8U9C11G12G13cWWtSW
14 HL_4V9F_0444V9F0.10221UNCG0 LSU rRNAC1769U1770C1772G1773G1774cWWtSW
15 HL_8ID2_0018ID20.09411UNCGCRNA (24-mer)G10U11C13G14C15cWWtSW
16 HL_4LFB_0094LFB0.11501UNCGA SSU rRNAC342U343C345G346G347cWWtSW
17 HL_6QN3_0036QN30.11601UNCGB Glutamine-IIC9U10C12G13G14cWWtSW
18 HL_6SY6_0016SY60.09541UNCGDRNA (36-MER)C19U20C22G23G24cWWtSW
19 HL_5LYS_0025LYS0.08781UNCGB7SK RNAC48U48|||AC48|||CG48|||DG60cWWtSW
20 HL_4JF2_0034JF20.10051UNCGAPreQ1-II RiboswitchC60U61C63G64G65cWWtSW
21 HL_5Y85_0045Y850.00001UNCGDDNA/RNA (50-MER)C28U29C31G32G33cWWtSW
22 HL_4LFB_0314LFB0.11271UNCGA SSU rRNAC1449U1450C1452G1453G1454cWWtSW
23 HL_6QN3_0016QN30.10411UNCGA Glutamine-IIC9U10C12G13G14cWWtSW
24 HL_4PDB_0014PDB0.10231UNCGISELEX RNA aptamerC17U18C20G21G22cWWtSW
25 HL_5D5L_0035D5L0.08631UNCGAPreQ1-II riboswitchC60U61C63G64G65cWWtSW
26 HL_8F5G_0018F5G0.09871UNCGDRNAC12U13C15G16G17cWWtSW
27 HL_7KKV_0027KKV0.12161UNCGBOLE* RNAC517U518C520G521G522cWWtSW
28 HL_1UN6_0031UN60.11021UNCGF5S RIBOSOMAL RNAC15U16C18G19G64cWWtSW
29 HL_4AY2_0014AY20.12481UNCGC5'-R-PPP(GP*GP*CP*GP*CP*GP*GP*CP*UP*UP*CP*GP*GP*CP *CP*GP*CP*GP*CP*C)-3'C8U9C11G12G13cWWtSW
30 HL_8C3A_2028C3A0.09601UNCGCM SSU rRNAC412C413A415G416G417cWWtSW
31 HL_6CZR_0806CZR0.11681UNCG1a SSU rRNAC338U339C341G342G343cWWtSW
32 HL_4V88_1964V880.11571UNCGA6 SSU rRNAC414C415A417G418G419cWWtSW
33 HL_4PMI_0044PMI0.10991UNCGARev-Response-Element RNAC53U54C56G57G58cWWtSW
34 HL_7OAX_0017OAX0.10001UNCGAChili RNA AptamerG21U22C24G25C26cWWtSW
35 HL_1I6U_0011I6U0.16031UNCGC16S RRNA FRAGMENTC16U17C19G20G21cWWtSW
36 HL_8VTW_0418VTW0.10261UNCG1A LSU rRNAC1691U1692C1694G1695G1696cWWtSW
37 HL_5J7L_1755J7L0.11821UNCGDA LSU rRNAC1691U1692C1694G1695G1696cWWtSW
38 HL_4LFB_0114LFB0.10681UNCGA SSU rRNAC419U420C422G423G424cWWtSW
39 HL_5J7L_0115J7L0.10451UNCGAA SSU rRNAC419U420C422G423G424cWWtSW
40 HL_5J7L_0305J7L0.11821UNCGAA SSU rRNAC1449U1450C1452G1453G1454cWWtSW
41 HL_7L0Z_0017L0Z0.12171UNCGGRNA (69-MER)G30U31C33G34C35cWWtSW
42 HL_8T29_0028T290.15101UNCGRRNA (90-MER)C58U59C61G62G63cWWtSW
43 HL_5J7L_1715J7L0.18481UNCGDA LSU rRNAC1533U1534C1536G1537G1538cWWtSW
44 HL_7RGU_0057RGU0.20001UNCGFModified SL3 of RocRC10U11C13G14G15ncWWtSW
45 HL_1NBS_0061NBS0.20771UNCGB RNase P class BC152U153C155G156G157cWWtSW
46 HL_5ML7_0025ML70.30431UNCGB23S ribosomal RNAC2187G2188U2190A2191G2192cWW
47 HL_6DME_0026DME0.26921UNCGAppGpp RiboswitchC57U58C60G61G62cWW
48 HL_4LGT_0014LGT0.28991UNCGEstem-loop of 23S rRNAC2594G2595G2597A2598G2599cWWtSW
49 HL_6DLR_0016DLR0.60361UNCG variationAGuanidine-I riboswitchC27U28C30G31G32cWWtSW

3D structures

Complete motif including flanking bases
SequenceCounts
CUUCGG31
CUACGG6
GUUCGC3
CCAAGG2
ACAGAUU1
AUUUGU1
CUCCGG1
AUUCGU1
GUACGC1
CGCUAG1
CGUGAG1
Non-Watson-Crick part of the motif
SequenceCounts
UUCG35
UACG7
CAAG2
CAGAU1
UUUG1
UCCG1
GCUA1
GUGA1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • UNCG (47)
  • UNCG variation (2)
  • Basepair signature
    cWW-tSW-F
    Heat map statistics
    Min 0.07 | Avg 0.21 | Max 0.99
    Help

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