RNA 3D Hub //

Motif HL_30680.2 Version HL_30680.2 of this group appears in releases 3.91 to 3.94

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 71-7
1 HL_4OQU_0024OQU0.51972Pseudoknot geometryASAM-I/IV riboswitchG32C34G35G36A37C38C40cWW
2 HL_1WZ2_0061WZ20.46612Pseudoknot geometryDtRNAA934C937A938A939G940A941U942cWW
3 HL_7A0S_0147A0S0.17781Pseudoknot geometryX LSU rRNAG423A425C426C427A428C429C430cWW
4 HL_4WF9_0144WF90.15261Pseudoknot geometryX LSU rRNAG456A458C459C460A461U462C463cWW
5 HL_5J7L_1465J7L0.11631Pseudoknot geometryDA LSU rRNAG410A412C413C414A415U416C417cWW
6 HL_9DFE_0139DFE0.00001Pseudoknot geometry (H)1A LSU rRNAG410A412C413C414A415C416C417cWW
7 HL_3HHN_0093HHN0.26991Pseudoknot geometryEClass I ligase ribozyme, self-ligation productG75G77G78C79A80G81C82cWW
8 HL_3IVK_0043IVK0.28941Pseudoknot geometryMclass I ligase productG75G77G78C79A80G81C82cWW
9 HL_3V7E_0013V7E0.55290Pseudoknot geometryC SAM-I riboswitchG23A24C25U26G27G28C29cWW
10 HL_6MWN_0046MWN0.61670Pseudoknot geometryB IRESG650C651U652G653G654A655C656cWW
11 HL_5FJC_0015FJC0.53370Pseudoknot geometryA SAM-I riboswitchG23A24C25U26G27G28C29cWW
12 HL_4AOB_0014AOB0.56470Pseudoknot geometryA SAM-I riboswitchG23A24C25U26G27G28C29cWW
13 HL_4KQY_0014KQY0.56670Pseudoknot geometryA SAM-I riboswitchG23A24C25U26G27G28C29cWW
14 HL_6VMY_0036VMY0.70900Pseudoknot geometryACobalamin riboswitchG268U269C270C271C272G273C274cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GACUGGC4
GGACCACC2
GGACCAUC2
GUGGCAGC2
GACGGACAC1
ACUCAAGAU1
GCUGGAC1
GUCCCGC1
Non-Watson-Crick part of the motif
SequenceCounts
ACUGG4
GACCAC2
GACCAU2
UGGCAG2
ACGGACA1
CUCAAGA1
CUGGA1
UCCCG1

Release history

Release3.913.923.933.94
Date2024-12-042025-01-012025-01-292025-02-26
StatusUpdated, 1 parentExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Pseudoknot geometry (13)
  • Pseudoknot geometry (H) (1)
    • Basepair signature
    cWW-F-F-F-F-F
    Heat map statistics
    Min 0.10 | Avg 0.46 | Max 0.85
    Help

    Coloring options:

    HL_4OQU_002:HL_4OQU_002 = 0HL_4OQU_002:HL_1WZ2_006 = 0.6588HL_4OQU_002:HL_7A0S_014 = 0.533HL_4OQU_002:HL_4WF9_014 = 0.5122HL_4OQU_002:HL_5J7L_146 = 0.5353HL_4OQU_002:HL_9DFE_013 = 0.5197HL_4OQU_002:HL_3HHN_009 = 0.546HL_4OQU_002:HL_3IVK_004 = 0.5388HL_4OQU_002:HL_3V7E_001 = 0.7364HL_4OQU_002:HL_6MWN_004 = 0.8324HL_4OQU_002:HL_5FJC_001 = 0.7542HL_4OQU_002:HL_4AOB_001 = 0.7166HL_4OQU_002:HL_4KQY_001 = 0.7214HL_4OQU_002:HL_6VMY_003 = 0.8416HL_1WZ2_006:HL_4OQU_002 = 0.6588HL_1WZ2_006:HL_1WZ2_006 = 0HL_1WZ2_006:HL_7A0S_014 = 0.4693HL_1WZ2_006:HL_4WF9_014 = 0.5045HL_1WZ2_006:HL_5J7L_146 = 0.4786HL_1WZ2_006:HL_9DFE_013 = 0.4661HL_1WZ2_006:HL_3HHN_009 = 0.5087HL_1WZ2_006:HL_3IVK_004 = 0.4932HL_1WZ2_006:HL_3V7E_001 = 0.8377HL_1WZ2_006:HL_6MWN_004 = 0.8508HL_1WZ2_006:HL_5FJC_001 = 0.7758HL_1WZ2_006:HL_4AOB_001 = 0.7767HL_1WZ2_006:HL_4KQY_001 = 0.8262HL_1WZ2_006:HL_6VMY_003 = 0.7829HL_7A0S_014:HL_4OQU_002 = 0.533HL_7A0S_014:HL_1WZ2_006 = 0.4693HL_7A0S_014:HL_7A0S_014 = 0HL_7A0S_014:HL_4WF9_014 = 0.1496HL_7A0S_014:HL_5J7L_146 = 0.114HL_7A0S_014:HL_9DFE_013 = 0.1778HL_7A0S_014:HL_3HHN_009 = 0.3875HL_7A0S_014:HL_3IVK_004 = 0.4096HL_7A0S_014:HL_3V7E_001 = 0.63HL_7A0S_014:HL_6MWN_004 = 0.6841HL_7A0S_014:HL_5FJC_001 = 0.6017HL_7A0S_014:HL_4AOB_001 = 0.6324HL_7A0S_014:HL_4KQY_001 = 0.6345HL_7A0S_014:HL_6VMY_003 = 0.7705HL_4WF9_014:HL_4OQU_002 = 0.5122HL_4WF9_014:HL_1WZ2_006 = 0.5045HL_4WF9_014:HL_7A0S_014 = 0.1496HL_4WF9_014:HL_4WF9_014 = 0HL_4WF9_014:HL_5J7L_146 = 0.1082HL_4WF9_014:HL_9DFE_013 = 0.1526HL_4WF9_014:HL_3HHN_009 = 0.3475HL_4WF9_014:HL_3IVK_004 = 0.3689HL_4WF9_014:HL_3V7E_001 = 0.5512HL_4WF9_014:HL_6MWN_004 = 0.5996HL_4WF9_014:HL_5FJC_001 = 0.5229HL_4WF9_014:HL_4AOB_001 = 0.5481HL_4WF9_014:HL_4KQY_001 = 0.5495HL_4WF9_014:HL_6VMY_003 = 0.6875HL_5J7L_146:HL_4OQU_002 = 0.5353HL_5J7L_146:HL_1WZ2_006 = 0.4786HL_5J7L_146:HL_7A0S_014 = 0.114HL_5J7L_146:HL_4WF9_014 = 0.1082HL_5J7L_146:HL_5J7L_146 = 0HL_5J7L_146:HL_9DFE_013 = 0.1163HL_5J7L_146:HL_3HHN_009 = 0.3412HL_5J7L_146:HL_3IVK_004 = 0.3647HL_5J7L_146:HL_3V7E_001 = 0.5858HL_5J7L_146:HL_6MWN_004 = 0.6459HL_5J7L_146:HL_5FJC_001 = 0.5667HL_5J7L_146:HL_4AOB_001 = 0.5983HL_5J7L_146:HL_4KQY_001 = 0.5992HL_5J7L_146:HL_6VMY_003 = 0.7432HL_9DFE_013:HL_4OQU_002 = 0.5197HL_9DFE_013:HL_1WZ2_006 = 0.4661HL_9DFE_013:HL_7A0S_014 = 0.1778HL_9DFE_013:HL_4WF9_014 = 0.1526HL_9DFE_013:HL_5J7L_146 = 0.1163HL_9DFE_013:HL_9DFE_013 = 0HL_9DFE_013:HL_3HHN_009 = 0.2699HL_9DFE_013:HL_3IVK_004 = 0.2894HL_9DFE_013:HL_3V7E_001 = 0.5529HL_9DFE_013:HL_6MWN_004 = 0.6167HL_9DFE_013:HL_5FJC_001 = 0.5337HL_9DFE_013:HL_4AOB_001 = 0.5647HL_9DFE_013:HL_4KQY_001 = 0.5667HL_9DFE_013:HL_6VMY_003 = 0.709HL_3HHN_009:HL_4OQU_002 = 0.546HL_3HHN_009:HL_1WZ2_006 = 0.5087HL_3HHN_009:HL_7A0S_014 = 0.3875HL_3HHN_009:HL_4WF9_014 = 0.3475HL_3HHN_009:HL_5J7L_146 = 0.3412HL_3HHN_009:HL_9DFE_013 = 0.2699HL_3HHN_009:HL_3HHN_009 = 0HL_3HHN_009:HL_3IVK_004 = 0.1032HL_3HHN_009:HL_3V7E_001 = 0.514HL_3HHN_009:HL_6MWN_004 = 0.6096HL_3HHN_009:HL_5FJC_001 = 0.5143HL_3HHN_009:HL_4AOB_001 = 0.5233HL_3HHN_009:HL_4KQY_001 = 0.5187HL_3HHN_009:HL_6VMY_003 = 0.5217HL_3IVK_004:HL_4OQU_002 = 0.5388HL_3IVK_004:HL_1WZ2_006 = 0.4932HL_3IVK_004:HL_7A0S_014 = 0.4096HL_3IVK_004:HL_4WF9_014 = 0.3689HL_3IVK_004:HL_5J7L_146 = 0.3647HL_3IVK_004:HL_9DFE_013 = 0.2894HL_3IVK_004:HL_3HHN_009 = 0.1032HL_3IVK_004:HL_3IVK_004 = 0HL_3IVK_004:HL_3V7E_001 = 0.526HL_3IVK_004:HL_6MWN_004 = 0.6232HL_3IVK_004:HL_5FJC_001 = 0.5279HL_3IVK_004:HL_4AOB_001 = 0.5342HL_3IVK_004:HL_4KQY_001 = 0.5476HL_3IVK_004:HL_6VMY_003 = 0.5422HL_3V7E_001:HL_4OQU_002 = 0.7364HL_3V7E_001:HL_1WZ2_006 = 0.8377HL_3V7E_001:HL_7A0S_014 = 0.63HL_3V7E_001:HL_4WF9_014 = 0.5512HL_3V7E_001:HL_5J7L_146 = 0.5858HL_3V7E_001:HL_9DFE_013 = 0.5529HL_3V7E_001:HL_3HHN_009 = 0.514HL_3V7E_001:HL_3IVK_004 = 0.526HL_3V7E_001:HL_3V7E_001 = 0HL_3V7E_001:HL_6MWN_004 = 0.3391HL_3V7E_001:HL_5FJC_001 = 0.2223HL_3V7E_001:HL_4AOB_001 = 0.2656HL_3V7E_001:HL_4KQY_001 = 0.3004HL_3V7E_001:HL_6VMY_003 = 0.5177HL_6MWN_004:HL_4OQU_002 = 0.8324HL_6MWN_004:HL_1WZ2_006 = 0.8508HL_6MWN_004:HL_7A0S_014 = 0.6841HL_6MWN_004:HL_4WF9_014 = 0.5996HL_6MWN_004:HL_5J7L_146 = 0.6459HL_6MWN_004:HL_9DFE_013 = 0.6167HL_6MWN_004:HL_3HHN_009 = 0.6096HL_6MWN_004:HL_3IVK_004 = 0.6232HL_6MWN_004:HL_3V7E_001 = 0.3391HL_6MWN_004:HL_6MWN_004 = 0HL_6MWN_004:HL_5FJC_001 = 0.1902HL_6MWN_004:HL_4AOB_001 = 0.2206HL_6MWN_004:HL_4KQY_001 = 0.2435HL_6MWN_004:HL_6VMY_003 = 0.3179HL_5FJC_001:HL_4OQU_002 = 0.7542HL_5FJC_001:HL_1WZ2_006 = 0.7758HL_5FJC_001:HL_7A0S_014 = 0.6017HL_5FJC_001:HL_4WF9_014 = 0.5229HL_5FJC_001:HL_5J7L_146 = 0.5667HL_5FJC_001:HL_9DFE_013 = 0.5337HL_5FJC_001:HL_3HHN_009 = 0.5143HL_5FJC_001:HL_3IVK_004 = 0.5279HL_5FJC_001:HL_3V7E_001 = 0.2223HL_5FJC_001:HL_6MWN_004 = 0.1902HL_5FJC_001:HL_5FJC_001 = 0HL_5FJC_001:HL_4AOB_001 = 0.1322HL_5FJC_001:HL_4KQY_001 = 0.2039HL_5FJC_001:HL_6VMY_003 = 0.2661HL_4AOB_001:HL_4OQU_002 = 0.7166HL_4AOB_001:HL_1WZ2_006 = 0.7767HL_4AOB_001:HL_7A0S_014 = 0.6324HL_4AOB_001:HL_4WF9_014 = 0.5481HL_4AOB_001:HL_5J7L_146 = 0.5983HL_4AOB_001:HL_9DFE_013 = 0.5647HL_4AOB_001:HL_3HHN_009 = 0.5233HL_4AOB_001:HL_3IVK_004 = 0.5342HL_4AOB_001:HL_3V7E_001 = 0.2656HL_4AOB_001:HL_6MWN_004 = 0.2206HL_4AOB_001:HL_5FJC_001 = 0.1322HL_4AOB_001:HL_4AOB_001 = 0HL_4AOB_001:HL_4KQY_001 = 0.1654HL_4AOB_001:HL_6VMY_003 = 0.2329HL_4KQY_001:HL_4OQU_002 = 0.7214HL_4KQY_001:HL_1WZ2_006 = 0.8262HL_4KQY_001:HL_7A0S_014 = 0.6345HL_4KQY_001:HL_4WF9_014 = 0.5495HL_4KQY_001:HL_5J7L_146 = 0.5992HL_4KQY_001:HL_9DFE_013 = 0.5667HL_4KQY_001:HL_3HHN_009 = 0.5187HL_4KQY_001:HL_3IVK_004 = 0.5476HL_4KQY_001:HL_3V7E_001 = 0.3004HL_4KQY_001:HL_6MWN_004 = 0.2435HL_4KQY_001:HL_5FJC_001 = 0.2039HL_4KQY_001:HL_4AOB_001 = 0.1654HL_4KQY_001:HL_4KQY_001 = 0HL_4KQY_001:HL_6VMY_003 = 0.2419HL_6VMY_003:HL_4OQU_002 = 0.8416HL_6VMY_003:HL_1WZ2_006 = 0.7829HL_6VMY_003:HL_7A0S_014 = 0.7705HL_6VMY_003:HL_4WF9_014 = 0.6875HL_6VMY_003:HL_5J7L_146 = 0.7432HL_6VMY_003:HL_9DFE_013 = 0.709HL_6VMY_003:HL_3HHN_009 = 0.5217HL_6VMY_003:HL_3IVK_004 = 0.5422HL_6VMY_003:HL_3V7E_001 = 0.5177HL_6VMY_003:HL_6MWN_004 = 0.3179HL_6VMY_003:HL_5FJC_001 = 0.2661HL_6VMY_003:HL_4AOB_001 = 0.2329HL_6VMY_003:HL_4KQY_001 = 0.2419HL_6VMY_003:HL_6VMY_003 = 0HL_4OQU_002HL_1WZ2_006HL_7A0S_014HL_4WF9_014HL_5J7L_146HL_9DFE_013HL_3HHN_009HL_3IVK_004HL_3V7E_001HL_6MWN_004HL_5FJC_001HL_4AOB_001HL_4KQY_001HL_6VMY_003Discrepancy0.000.200.400.600.80
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