Motif HL_31286.3 Version HL_31286.3 of this group appears in releases 3.33 to 3.61
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3MJA_001 | 3MJA | 0.7120 | 1 | B | Domain 3 of the cricket paralysis virus intergenic region IRES RNA | A | 6184 | U | 6185 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | ||
| 2 | HL_4V83_139 | 4V83 | 0.7019 | 1 | CV | domain 3 of PSIC IGR IRES RNA | A | 6160 | U | 6161 | A | 6163 | A | 6164 | G | 6165 | U | 6166 | G | 6167 | G | 6168 | U | 6169 | cWW | ncWW | |
| 3 | HL_6VMY_005 | 6VMY | 0.6854 | 1 | A | Cobalamin riboswitch | U | 333 | C | 334 | G | 336 | C | 337 | G | 338 | A | 339 | G | 340 | G | 341 | A | 342 | cWW | ||
| 4 | HL_5TPY_005 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28 | U | 29 | G | 31 | G | 32 | G | 33 | G | 34 | A | 35 | A | 36 | G | 38 | cWW | tWH | |
| 5 | HL_5TPY_008 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28||||4_655 | U | 29||||4_655 | G | 31||||4_655 | G | 32||||4_655 | G | 33||||4_655 | G | 34||||4_655 | A | 35||||4_655 | A | 36||||4_655 | G | 38||||4_655 | cWW | tWH | |
| 6 | HL_5TPY_011 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28||||8_555 | U | 29||||8_555 | G | 31||||8_555 | G | 32||||8_555 | G | 33||||8_555 | G | 34||||8_555 | A | 35||||8_555 | A | 36||||8_555 | G | 38||||8_555 | cWW | tWH | |
| 7 | HL_5TPY_002 | 5TPY | 0.0000 | 2 | A | RNA (71-MER) | U | 28||||11_655 | U | 29||||11_655 | G | 31||||11_655 | G | 32||||11_655 | G | 33||||11_655 | G | 34||||11_655 | A | 35||||11_655 | A | 36||||11_655 | G | 38||||11_655 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUUGGGGAAAG | 4 |
| AUUAGGUAGU | 1 |
| AUUAAGUGGU | 1 |
| UCUGCGAGGA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGGGGAAA | 4 |
| UUAGGUAG | 1 |
| UUAAGUGG | 1 |
| CUGCGAGG | 1 |
Release history
| Release | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 | 3.46 | 3.47 | 3.48 | 3.49 | 3.50 | 3.51 | 3.52 | 3.53 | 3.54 | 3.55 | 3.56 | 3.57 | 3.58 | 3.59 | 3.60 | 3.61 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 | 2021-06-23 | 2021-07-21 | 2021-08-18 | 2021-09-15 | 2021-10-13 | 2021-11-10 | 2021-12-08 | 2022-01-05 | 2022-02-02 | 2022-03-02 | 2022-03-30 | 2022-04-27 | 2022-05-25 | 2022-06-22 | 2022-07-20 | 2022-08-17 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
- Basepair signature
- cWW-tWH-R-R-R-R-R
- Heat map statistics
- Min 0.28 | Avg 0.40 | Max 0.71
Coloring options: