Motif HL_32512.4 Version HL_32512.4 of this group appears in releases 3.33 to 3.45
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6VMY_003 | 6VMY | 0.5098 | 0 | Pseudoknot geometry | A | Cobalamin riboswitch | G | 268 | U | 269 | C | 270 | C | 271 | C | 272 | G | 273 | C | 274 | cWW |
| 2 | HL_5U30_002 | 5U30 | 0.4643 | 0 | Pseudoknot geometry | B | sgRNA | U | 43 | U | 44 | U | 45 | C | 46 | C | 47 | A | 48 | G | 49 | cWW |
| 3 | HL_6MWN_004 | 6MWN | 0.3217 | 0 | Pseudoknot geometry | B | IRES | G | 650 | C | 651 | U | 652 | G | 653 | G | 654 | A | 655 | C | 656 | cWW |
| 4 | HL_2YGH_001 | 2YGH | 0.1469 | 0 | Pseudoknot geometry (H) | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 5 | HL_2YGH_004 | 2YGH | 0.1469 | 0 | A | SAM-I riboswitch | G | 23||||8_554 | A | 24||||8_554 | C | 25||||8_554 | U | 26||||8_554 | G | 27||||8_554 | G | 28||||8_554 | C | 29||||8_554 | cWW | |
| 6 | HL_5FJC_001 | 5FJC | 0.1489 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 7 | HL_4AOB_001 | 4AOB | 0.0000 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 8 | HL_4AOB_004 | 4AOB | 0.0000 | 0 | A | SAM-I riboswitch | G | 23||||7_555 | A | 24||||7_555 | C | 25||||7_555 | U | 26||||7_555 | G | 27||||7_555 | G | 28||||7_555 | C | 29||||7_555 | cWW | |
| 9 | HL_4KQY_001 | 4KQY | 0.1788 | 0 | Pseudoknot geometry | A | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 10 | HL_4KQY_004 | 4KQY | 0.1788 | 0 | A | SAM-I riboswitch | G | 23||||4_555 | A | 24||||4_555 | C | 25||||4_555 | U | 26||||4_555 | G | 27||||4_555 | G | 28||||4_555 | C | 29||||4_555 | cWW | |
| 11 | HL_3V7E_001 | 3V7E | 0.2544 | 0 | Pseudoknot geometry | C | SAM-I riboswitch | G | 23 | A | 24 | C | 25 | U | 26 | G | 27 | G | 28 | C | 29 | cWW |
| 12 | HL_3HHN_009 | 3HHN | 0.4550 | 1 | Pseudoknot geometry | E | Class I ligase ribozyme, self-ligation product | G | 75 | G | 77 | G | 78 | C | 79 | A | 80 | G | 81 | C | 82 | cWW |
| 13 | HL_3IVK_004 | 3IVK | 0.4615 | 1 | Pseudoknot geometry | M | class I ligase product | G | 75 | G | 77 | G | 78 | C | 79 | A | 80 | G | 81 | C | 82 | cWW |
| 14 | HL_4OQU_002 | 4OQU | 0.6203 | 2 | Pseudoknot geometry | A | SAM-I-IV-variant | G | 32 | C | 34 | G | 35 | G | 36 | A | 37 | C | 38 | C | 40 | cWW |
| 15 | HL_4WF9_014 | 4WF9 | 0.5682 | 1 | Pseudoknot geometry | X | LSU rRNA | G | 456 | A | 458 | C | 459 | C | 460 | A | 461 | U | 462 | C | 463 | cWW |
| 16 | HL_5J7L_146 | 5J7L | 0.6070 | 1 | Pseudoknot geometry | DA | LSU rRNA | G | 410 | A | 412 | C | 413 | C | 414 | A | 415 | U | 416 | C | 417 | cWW |
| 17 | HL_4Y4O_116 | 4Y4O | 0.5757 | 1 | 2A | LSU rRNA | G | 410 | A | 412 | C | 413 | C | 414 | A | 415 | C | 416 | C | 417 | cWW | |
| 18 | HL_4IOA_013 | 4IOA | 0.6277 | 1 | Pseudoknot geometry (H) | X | LSU rRNA | G | 423 | A | 425 | C | 426 | C | 427 | A | 428 | C | 429 | C | 430 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GACUGGC | 8 |
| GUGGCAGC | 2 |
| GGACCAUC | 2 |
| GGACCACC | 2 |
| GUCCCGC | 1 |
| UUUCCAG | 1 |
| GCUGGAC | 1 |
| GACGGACAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACUGG | 8 |
| UGGCAG | 2 |
| GACCAU | 2 |
| GACCAC | 2 |
| UCCCG | 1 |
| UUCCA | 1 |
| CUGGA | 1 |
| ACGGACA | 1 |
Release history
| Release | 3.33 | 3.34 | 3.35 | 3.36 | 3.37 | 3.38 | 3.39 | 3.40 | 3.41 | 3.42 | 3.43 | 3.44 | 3.45 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2020-06-24 | 2020-07-22 | 2020-08-19 | 2020-09-16 | 2020-10-14 | 2020-11-11 | 2020-12-09 | 2021-01-06 | 2021-02-03 | 2021-03-03 | 2021-03-31 | 2021-04-28 | 2021-05-26 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot geometry (12)
- (4)
- Pseudoknot geometry (H) (2)
- Basepair signature
- cWW-R-R-R-R
- Heat map statistics
- Min 0.08 | Avg 0.46 | Max 0.94
Coloring options: