Motif HL_36982.2 Version HL_36982.2 of this group appears in releases 3.3 to 3.31
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_204 | 5J7L | 0.9211 | 2 | DB | 5S rRNA | G | 86 | C | 88 | C | 90 | cWW | |
| 2 | HL_5TBW_004 | 5TBW | 0.6286 | 2 | 1 | LSU rRNA | C | 132 | U | 134 | G | 136 | cWW | |
| 3 | HL_1ZBH_001 | 1ZBH | 0.2863 | 3 | F | RNA (20-mer) | U | 11 | U | 14 | A | 16 | cWW | |
| 4 | HL_4QOZ_001 | 4QOZ | 0.2535 | 3 | A | histone mRNA stem-loop | U | 11 | U | 14 | A | 16 | cWW | |
| 5 | HL_4TUW_002 | 4TUW | 0.2776 | 3 | C | HISTONE MRNA 3' STEM LOOP | U | 13 | U | 16 | A | 18 | cWW | |
| 6 | HL_4QI2_003 | 4QI2 | 0.1018 | 2 | G | RNA (23-mer) | C | 10 | G | 12 | G | 14 | cWW | |
| 7 | HL_4ZLD_001 | 4ZLD | 0.0000 | 2 | B | RNA (17-mer) | C | 7 | G | 9 | G | 11 | cWW | |
| 8 | HL_4Z31_001 | 4Z31 | 0.0524 | 2 | E | RNA (15-mer) | C | 6 | G | 8 | G | 10 | cWW | |
| 9 | HL_4QIL_002 | 4QIL | 0.0704 | 2 | C | RNA (19-mer) | C | 8 | G | 10 | G | 12 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGUG | 4 |
| UUUUCA | 3 |
| GUCUC | 1 |
| CUUCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGU | 4 |
| UUUC | 3 |
| UCU | 1 |
| UUC | 1 |
Release history
| Release | 3.3 | 3.4 | 3.5 | 3.6 | 3.7 | 3.8 | 3.9 | 3.10 | 3.11 | 3.12 | 3.13 | 3.14 | 3.15 | 3.16 | 3.17 | 3.18 | 3.19 | 3.20 | 3.21 | 3.22 | 3.23 | 3.24 | 3.25 | 3.26 | 3.27 | 3.28 | 3.29 | 3.30 | 3.31 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2018-03-08 | 2018-04-06 | 2018-05-04 | 2018-06-01 | 2018-06-29 | 2018-07-27 | 2018-08-24 | 2018-09-21 | 2018-10-19 | 2018-11-16 | 2018-12-14 | 2019-01-11 | 2019-02-08 | 2019-03-08 | 2019-04-05 | 2019-05-03 | 2019-05-31 | 2019-06-28 | 2019-07-26 | 2019-08-23 | 2019-09-19 | 2019-10-16 | 2019-11-13 | 2019-12-11 | 2020-01-08 | 2020-02-05 | 2020-03-04 | 2020-04-01 | 2020-04-29 |
| Status | Updated, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: