RNA 3D Hub //

Motif HL_36982.2 Version HL_36982.2 of this group appears in releases 3.3 to 3.31

#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 31-3
1 HL_5J7L_2045J7L0.92112Mini UNCGDB 5S rRNAG86C88C90cWW
2 HL_5TBW_0045TBW0.628621 LSU rRNAC132U134G136cWW
3 HL_1ZBH_0011ZBH0.28633Mini UNCGFRNA (20-mer)U11U14A16cWW
4 HL_4QOZ_0014QOZ0.25353Mini UNCGAhistone mRNA stem-loopU11U14A16cWW
5 HL_4TUW_0024TUW0.27763Mini UNCGCHISTONE MRNA 3' STEM LOOPU13U16A18cWW
6 HL_4QI2_0034QI20.10182Mini UNCGGRNA (23-mer)C10G12G14cWW
7 HL_4ZLD_0014ZLD0.00002Mini UNCGBRNA (17-mer)C7G9G11cWW
8 HL_4Z31_0014Z310.05242Mini UNCGERNA (15-mer)C6G8G10cWW
9 HL_4QIL_0024QIL0.07042Mini UNCGCRNA (19-mer)C8G10G12cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CUGUG4
UUUUCA3
GUCUC1
CUUCG1
Non-Watson-Crick part of the motif
SequenceCounts
UGU4
UUUC3
UCU1
UUC1

Release history

Release3.33.43.53.63.73.83.93.103.113.123.133.143.153.163.173.183.193.203.213.223.233.243.253.263.273.283.293.303.31
Date2018-03-082018-04-062018-05-042018-06-012018-06-292018-07-272018-08-242018-09-212018-10-192018-11-162018-12-142019-01-112019-02-082019-03-082019-04-052019-05-032019-05-312019-06-282019-07-262019-08-232019-09-192019-10-162019-11-132019-12-112020-01-082020-02-052020-03-042020-04-012020-04-29
StatusUpdated, 2 parentsExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • Mini UNCG (8)
  • (1)
    • Basepair signature
    cWW
    Heat map statistics
    Min 0.05 | Avg 0.40 | Max 1.00
    Help

    Coloring options:

    HL_5J7L_204:HL_5J7L_204 = 0HL_5J7L_204:HL_5TBW_004 = 0.6319HL_5J7L_204:HL_1ZBH_001 = 0.8214HL_5J7L_204:HL_4QOZ_001 = 0.9369HL_5J7L_204:HL_4TUW_002 = 1.0025HL_5J7L_204:HL_4QI2_003 = 0.9687HL_5J7L_204:HL_4ZLD_001 = 0.9211HL_5J7L_204:HL_4Z31_001 = 0.9438HL_5J7L_204:HL_4QIL_002 = 0.9686HL_5TBW_004:HL_5J7L_204 = 0.6319HL_5TBW_004:HL_5TBW_004 = 0HL_5TBW_004:HL_1ZBH_001 = 0.6081HL_5TBW_004:HL_4QOZ_001 = 0.5813HL_5TBW_004:HL_4TUW_002 = 0.5868HL_5TBW_004:HL_4QI2_003 = 0.6469HL_5TBW_004:HL_4ZLD_001 = 0.6286HL_5TBW_004:HL_4Z31_001 = 0.657HL_5TBW_004:HL_4QIL_002 = 0.6726HL_1ZBH_001:HL_5J7L_204 = 0.8214HL_1ZBH_001:HL_5TBW_004 = 0.6081HL_1ZBH_001:HL_1ZBH_001 = 0HL_1ZBH_001:HL_4QOZ_001 = 0.2223HL_1ZBH_001:HL_4TUW_002 = 0.3262HL_1ZBH_001:HL_4QI2_003 = 0.3102HL_1ZBH_001:HL_4ZLD_001 = 0.2863HL_1ZBH_001:HL_4Z31_001 = 0.2988HL_1ZBH_001:HL_4QIL_002 = 0.3052HL_4QOZ_001:HL_5J7L_204 = 0.9369HL_4QOZ_001:HL_5TBW_004 = 0.5813HL_4QOZ_001:HL_1ZBH_001 = 0.2223HL_4QOZ_001:HL_4QOZ_001 = 0HL_4QOZ_001:HL_4TUW_002 = 0.1383HL_4QOZ_001:HL_4QI2_003 = 0.238HL_4QOZ_001:HL_4ZLD_001 = 0.2535HL_4QOZ_001:HL_4Z31_001 = 0.2723HL_4QOZ_001:HL_4QIL_002 = 0.2588HL_4TUW_002:HL_5J7L_204 = 1.0025HL_4TUW_002:HL_5TBW_004 = 0.5868HL_4TUW_002:HL_1ZBH_001 = 0.3262HL_4TUW_002:HL_4QOZ_001 = 0.1383HL_4TUW_002:HL_4TUW_002 = 0HL_4TUW_002:HL_4QI2_003 = 0.2383HL_4TUW_002:HL_4ZLD_001 = 0.2776HL_4TUW_002:HL_4Z31_001 = 0.2955HL_4TUW_002:HL_4QIL_002 = 0.2723HL_4QI2_003:HL_5J7L_204 = 0.9687HL_4QI2_003:HL_5TBW_004 = 0.6469HL_4QI2_003:HL_1ZBH_001 = 0.3102HL_4QI2_003:HL_4QOZ_001 = 0.238HL_4QI2_003:HL_4TUW_002 = 0.2383HL_4QI2_003:HL_4QI2_003 = 0HL_4QI2_003:HL_4ZLD_001 = 0.1018HL_4QI2_003:HL_4Z31_001 = 0.1054HL_4QI2_003:HL_4QIL_002 = 0.1043HL_4ZLD_001:HL_5J7L_204 = 0.9211HL_4ZLD_001:HL_5TBW_004 = 0.6286HL_4ZLD_001:HL_1ZBH_001 = 0.2863HL_4ZLD_001:HL_4QOZ_001 = 0.2535HL_4ZLD_001:HL_4TUW_002 = 0.2776HL_4ZLD_001:HL_4QI2_003 = 0.1018HL_4ZLD_001:HL_4ZLD_001 = 0HL_4ZLD_001:HL_4Z31_001 = 0.0524HL_4ZLD_001:HL_4QIL_002 = 0.0704HL_4Z31_001:HL_5J7L_204 = 0.9438HL_4Z31_001:HL_5TBW_004 = 0.657HL_4Z31_001:HL_1ZBH_001 = 0.2988HL_4Z31_001:HL_4QOZ_001 = 0.2723HL_4Z31_001:HL_4TUW_002 = 0.2955HL_4Z31_001:HL_4QI2_003 = 0.1054HL_4Z31_001:HL_4ZLD_001 = 0.0524HL_4Z31_001:HL_4Z31_001 = 0HL_4Z31_001:HL_4QIL_002 = 0.0584HL_4QIL_002:HL_5J7L_204 = 0.9686HL_4QIL_002:HL_5TBW_004 = 0.6726HL_4QIL_002:HL_1ZBH_001 = 0.3052HL_4QIL_002:HL_4QOZ_001 = 0.2588HL_4QIL_002:HL_4TUW_002 = 0.2723HL_4QIL_002:HL_4QI2_003 = 0.1043HL_4QIL_002:HL_4ZLD_001 = 0.0704HL_4QIL_002:HL_4Z31_001 = 0.0584HL_4QIL_002:HL_4QIL_002 = 0HL_5J7L_204HL_5TBW_004HL_1ZBH_001HL_4QOZ_001HL_4TUW_002HL_4QI2_003HL_4ZLD_001HL_4Z31_001HL_4QIL_002Discrepancy0.000.200.400.600.801.00
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