HL_39895.11

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name for chain		1		2		3		4		5	1-5	2-4
1	HL_2QBG_006	2QBG	0.7445	1		B	LSU rRNA	U	137	U	138	C	140	G	141	A	142	cWW	tSW
2	HL_4CUX_005	4CUX	0.6357	1		2	SSU rRNA	C	230	U	231	C	233	G	234	G	235	cWW
3	HL_4U7U_002	4U7U	0.5577	1		X	crRNA	C	51	G	52	C	54	A	55	G	56	cWW	tSW
4	HL_3V7E_005	3V7E	0.4295	1	UNCG (H)	D	SAM-I riboswitch	C	265	U	266	C	268	G	269	G	270	cWW
5	HL_4W21_053	4W21	0.3308	1		5	LSU rRNA	C	4102	C	4103	A	4105	G	4106	G	4107	cWW	ntSW
6	HL_1VW3_031	1VW3	0.4032	2		A	LSU rRNA	G	1643	U	1644	A	1646	G	1647	C	1649	cWW	tSW
7	HL_4FAW_008	4FAW	0.3506	1		A	Group II catalytic intron D1-D4-3	G	338	U	339	C	341	G	342	C	343	ncWW	tSW
8	HL_4QCN_049	4QCN	0.2813	1		A	LSU rRNA	C	2165	U	2166	C	2168	G	2169	G	2170	ncWW	tSW
9	HL_4W21_044	4W21	0.1572	1		5	LSU rRNA	C	2872	U	2873	C	2875	G	2876	G	2877	cWW	ntSW
10	HL_3U5F_011	3U5F	0.1311	1		6	SSU rRNA	C	414	C	415	A	417	G	418	G	419	cWW	tSW
11	HL_1VX6_043	1VX6	0.1183	1		A	LSU rRNA	C	2191	U	2192	C	2194	G	2195	G	2196	cWW	tSW
12	HL_3U5H_043	3U5H	0.1014	1		5	LSU rRNA	C	1923	U	1924	C	1926	G	1927	G	1928	cWW	tSW
13	HL_4A1B_042	4A1B	0.1047	1		1	LSU rRNA	C	1947	U	1948	C	1950	G	1951	G	1952	cWW	tSW
14	HL_4IOA_041	4IOA	0.1230	1	UNCG	X	LSU rRNA	C	1708	U	1709	C	1711	G	1712	G	1713	cWW	tSW
15	HL_2AW7_031	2AW7	0.1738	1		A	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
16	HL_1NBS_006	1NBS	0.1892	1	UNCG	B	RNase P class B	C	152	U	153	C	155	G	156	G	157	cWW	tSW
17	HL_2QBG_040	2QBG	0.1859	1		B	LSU rRNA	C	1533	U	1534	C	1536	G	1537	G	1538	cWW	tSW
18	HL_2AW7_011	2AW7	0.1876	1		A	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
19	HL_3UMY_001	3UMY	0.1543	1	UNCG (H)	B	LSU rRNA	C	2143	U	2144	C	2146	G	2147	G	2148	cWW	tSW
20	HL_2HW8_001	2HW8	0.1029	1	UNCG	B	36-MER	C	15	U	16	C	18	G	19	G	20	cWW	tSW
21	HL_4QCN_040	4QCN	0.0000	1		A	LSU rRNA	C	1738	U	1739	C	1741	G	1742	G	1743	cWW	tSW
22	HL_1I6U_002	1I6U	0.0849	1		D	16S RRNA FRAGMENT	C	16	U	17	C	19	G	20	G	21	cWW	tSW
23	HL_2QBG_044	2QBG	0.0921	1		B	LSU rRNA	C	1691	U	1692	C	1694	G	1695	G	1696	cWW	tSW
24	HL_4JF2_003	4JF2	0.1032	1	UNCG	A	PreQ1-II Riboswitch	C	60	U	61	C	63	G	64	G	65	cWW	tSW
25	HL_1F7Y_001	1F7Y	0.1386	1		B	16S RIBOSOMAL RNA FRAGMENT	C	8	U	9	C	11	G	12	G	13	cWW	tSW
26	HL_4PDB_001	4PDB	0.1059	1	UNCG	I	SELEX RNA aptamer	C	17	U	18	C	20	G	21	G	22	cWW	tSW
27	HL_1S72_044	1S72	0.0978	1	UNCG (H)	0	LSU rRNA	C	1769	U	1770	C	1772	G	1773	G	1774	cWW	tSW
28	HL_2AW7_009	2AW7	0.1329	1		A	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
29	HL_1UN6_003	1UN6	0.1068	1	UNCG	F	5S RIBOSOMAL RNA	C	15	U	16	C	18	G	19	G	64	cWW	tSW
30	HL_4AY2_001	4AY2	0.1412	1	UNCG	C	5'-R-PPP(GPGPCPGPCPGPGPCPUPUPCPGPGPCP CPGPCPGPCP*C)-3'	C	8	U	9	C	11	G	12	G	13	cWW	tSW
31	HL_1FJG_009	1FJG	0.1573	1	UNCG (H)	A	SSU rRNA	C	342	U	343	C	345	G	346	G	347	cWW	tSW
32	HL_1FJG_031	1FJG	0.1711	1	UNCG (H)	A	SSU rRNA	C	1449	U	1450	C	1452	G	1453	G	1454	cWW	tSW
33	HL_4CUV_043	4CUV	0.1355	1		1	LSU rRNA	C	1923	U	1924	C	1926	G	1927	G	1928	cWW	tSW
34	HL_1FJG_011	1FJG	0.1231	1	UNCG (H)	A	SSU rRNA	C	419	U	420	C	422	G	423	G	424	cWW	tSW
35	HL_1F7Y_002	1F7Y	0.2206	1		B	16S RIBOSOMAL RNA FRAGMENT	C	32	U	33	C	35	G	36	G	37	cWW	tSW
36	HL_4BPP_011	4BPP	0.2551	1		A	SSU rRNA	C	405	U	406	C	408	G	409	G	410	cWW	ntSWa
37	HL_4CUX_011	4CUX	0.2888	1		2	SSU rRNA	C	414	C	415	A	417	G	418	G	419	cWW	tSW
38	HL_3J7A_009	3J7A	0.1965	1	UNCG (H)	A	SSU rRNA	C	420	U	421	A	423	G	424	G	425	cWW	tSW
39	HL_1YKV_002	1YKV	0.1917	1		D	Diels-Alder ribozyme	C	220	U	221	C	223	G	224	G	225	ncWW	tSW
40	HL_4W23_010	4W23	0.1820	1		2	SSU rRNA	C	462	C	463	A	465	G	466	G	467	cWW	ntSW
41	HL_2AW7_005	2AW7	0.3396	1		A	SSU rRNA	C	207	U	208	C	210	G	211	G	212	cWW	ntSW
42	HL_2AW7_023	2AW7	0.3479	1		A	SSU rRNA	C	1028	U	1029	C	1031	G	1032	G	1033	cWW
43	HL_3U5F_005	3U5F	0.6471	1		6	SSU rRNA	C	230	U	231	C	233	G	234	G	235	ncWW
44	HL_4A1B_014	4A1B	0.5837	1		1	LSU rRNA	C	626	U	627	A	629	G	630	G	631	cWW	ncWW
45	HL_2NUE_001	2NUE	0.6246	1	UNCG variation	C	46-MER	C	21	G	22	A	24	A	25	G	26	cWW	ncSW
46	HL_3U5H_012	3U5H	0.6960	1		5	LSU rRNA	C	543	C	544	C	546	G	547	G	548	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUUCGG	26
CUACGG	6
CCAAGG	3
CUCCGG	2
CUAAGG	2
UUUCGA	1
CGCCAG	1
CCGAGG	1
GUUAGUC	1
GUUCGC	1
CGCAAG	1
CCUCGG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UUCG	28
UACG	6
CAAG	3
UCCG	2
UAAG	2
GCCA	1
CGAG	1
UUAGU	1
GCAA	1
CUCG	1

Release history

Release	1.18
Date	2014-10-09
Status	Updated, 1 parent

Parent motifs

Parent motif	Common motif instances	Only in HL_39895.11	Only in the parent motif
HL_39895.10 Compare	HL_1UN6_003, HL_4A1B_014, HL_2HW8_001, HL_1FJG_009, HL_4JF2_003, HL_1F7Y_001, HL_1F7Y_002, HL_3V7E_005, HL_4CUX_011, HL_3U5F_011, HL_3U5H_012, HL_1FJG_011, HL_4CUV_043, HL_1NBS_006, HL_1FJG_031, HL_4QCN_049, HL_2AW7_009, HL_2AW7_005, HL_1YKV_002, HL_4QCN_040, HL_4IOA_041, HL_1I6U_002, HL_3J7A_009, HL_2NUE_001, HL_1VX6_043, HL_3UMY_001, HL_3U5H_043, HL_4A1B_042, HL_2AW7_023, HL_4BPP_011, HL_3U5F_005, HL_4U7U_002, HL_4AY2_001, HL_2QBG_006, HL_4FAW_008, HL_4CUX_005, HL_1VW3_031, HL_2QBG_040, HL_2QBG_044, HL_1S72_044, HL_2AW7_011, HL_2AW7_031	HL_4W23_010, HL_4W21_053, HL_4PDB_001, HL_4W21_044	HL_1VWW_044, HL_1VWW_053, HL_1VX2_010

Children motifs

This motif has no children motifs.

Motif HL_39895.11 Version HL_39895.11 of this group appears in releases 1.18 to 1.18 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif HL_39895.11 Version HL_39895.11 of this group appears in releases 1.18 to 1.18

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Csv

Json