Motif HL_39947.1 Version HL_39947.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 2-7 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6MJ0_006 | 6MJ0 | 0.5068 | 2 | B | tRNA-like 3' UTR element | U | 12 | C | 13 | U | 14 | U | 15 | A | 18 | A | 19 | A | 20 | cWW | cSW | ncSH | |
| 2 | HL_5TBW_015 | 5TBW | 0.0673 | 2 | 1 | LSU rRNA | G | 686 | U | 687 | G | 688 | A | 690 | A | 692 | A | 693 | C | 694 | cWW | tSH | ||
| 3 | HL_8C3A_015 | 8C3A | 0.0000 | 2 | 1 | LSU rRNA | G | 684 | U | 685 | G | 686 | A | 688 | A | 690 | A | 691 | C | 692 | cWW | tSH | ||
| 4 | HL_4TUE_219 | 4TUE | 0.3690 | 3 | QY | A-site ASL-SufJ | C | 31 | C | 32 | U | 33 | U | 34 | A | 38 | A | 39 | G | 40 | cWW | ntWH | ||
| 5 | HL_6CF2_001 | 6CF2 | 0.4449 | 1 | G | RNA (35-MER) | A | 13 | C | 14 | U | 15 | C | 17 | G | 18 | G | 19 | U | 20 | cWW | |||
| 6 | HL_5J7L_212 | 5J7L | 0.3854 | 3 | DA | LSU rRNA | G | 1091 | C | 1092 | G | 1093 | U | 1094 | A | 1098 | G | 1099 | C | 1100 | cWW | ncwW | tSH | |
| 7 | HL_5TBW_028 | 5TBW | 0.6042 | 3 | 1 | LSU rRNA | G | 1266 | U | 1267 | G | 1268 | U | 1269 | A | 1273 | A | 1274 | C | 1275 | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUGUAAAAC | 2 |
| UCUUUAAAA | 1 |
| CCUUGGUAAG | 1 |
| ACUUCGGU | 1 |
| GCGUAAUAGC | 1 |
| GUGUAACAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGUAAAA | 2 |
| CUUUAAA | 1 |
| CUUGGUAA | 1 |
| CUUCGG | 1 |
| CGUAAUAG | 1 |
| UGUAACAA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (7)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.44 | Max 0.84
Coloring options: