#SLoop idPDBDisc#Non-coreChain(s)Standardized name 1 2 3 41-4
1 HL_1H4S_0021H4S0.47093T tRNAU32U33C34A38cWW
2 HL_8C3A_0768C3A0.331434 5.8S rRNAC108A109C110G114cWW
3 HL_5TBW_0755TBW0.318034 5.8S rRNAC108A109C110G114cWW
4 HL_6JQ6_0046JQ60.18422URNA (81-MER)C45U46C48G50cWW
5 HL_5MSF_0015MSF0.09592RRNA (18-mer)G7||||P_1A8||||P_1C10||||P_1C12||||P_1cWW
6 HL_1U1Y_0011U1Y0.09802RRNA (17-mer)G7||||P_1A8||||P_1C10||||P_1C12||||P_1cWW
7 HL_2C4Q_0012C4Q0.00002RRNA (19-mer)G8||||P_1A9||||P_1PYO11||||P_1C13||||P_1cWW
8 HL_2IZN_0012IZN0.08052RRNA (19-mer)G8||||P_1A9||||P_1U11||||P_1C13||||P_1cWW
9 HL_7MSF_0017MSF0.12432RRNA (14-mer)C5||||P_1A6||||P_1C8||||P_1G10||||P_1cWW
10 HL_7KI3_0017KI30.11492CHCV genotype 1a miR-122 site-1C10U11A13G15cWW
11 HL_4V88_2044V880.35903A6 SSU rRNAC777G778A780G783cWW
12 HL_8C3A_2038C3A0.24613CM SSU rRNAC448G449C451G454cWW

3D structures

Complete motif including flanking bases
SequenceCounts
CACAUUG2
GAUCAC2
UUCGGGA1
CUUCGG1
GAU(PYO)AC1
GAUUAC1
CAACAG1
CUGAUG1
CGUAUUG1
CGACACG1
Non-Watson-Crick part of the motif
SequenceCounts
ACAUU2
AUCA2
UCGGG1
UUCG1
AU(PYO)A1
AUUA1
AACA1
UGAU1
GUAUU1
GACAC1

Release history

Release3.88
Date2024-09-11
StatusNew id, > 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (12)
  • Basepair signature
    cWW-F-F
    Heat map statistics
    Min 0.08 | Avg 0.27 | Max 0.97
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