Motif HL_41152.1 Version HL_41152.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 1-4 | ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_1H4S_002 | 1H4S | 0.4709 | 3 | tRNA anticodon loop with synthetase | T | tRNA | U | 32 | U | 33 | C | 34 | A | 38 | cWW |
| 2 | HL_8C3A_076 | 8C3A | 0.3314 | 3 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | G | 114 | cWW | |
| 3 | HL_5TBW_075 | 5TBW | 0.3180 | 3 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | G | 114 | cWW | |
| 4 | HL_6JQ6_004 | 6JQ6 | 0.1842 | 2 | UNCG | U | Hatchet ribozyme | C | 45 | U | 46 | C | 48 | G | 50 | cWW |
| 5 | HL_5MSF_001 | 5MSF | 0.0959 | 2 | R | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW | |
| 6 | HL_1U1Y_001 | 1U1Y | 0.0980 | 2 | R | RNA (17-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW | |
| 7 | HL_2C4Q_001 | 2C4Q | 0.0000 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | PYO | 11||||P_1 | C | 13||||P_1 | cWW | |
| 8 | HL_2IZN_001 | 2IZN | 0.0805 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | U | 11||||P_1 | C | 13||||P_1 | cWW | |
| 9 | HL_7MSF_001 | 7MSF | 0.1243 | 2 | R | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | C | 8||||P_1 | G | 10||||P_1 | cWW | |
| 10 | HL_7KI3_001 | 7KI3 | 0.1149 | 2 | C | HCV genotype 1a miR-122 site-1 | C | 10 | U | 11 | A | 13 | G | 15 | cWW | |
| 11 | HL_4V88_204 | 4V88 | 0.3590 | 3 | A6 | SSU rRNA | C | 777 | G | 778 | A | 780 | G | 783 | cWW | |
| 12 | HL_8C3A_203 | 8C3A | 0.2461 | 3 | CM | SSU rRNA | C | 448 | G | 449 | C | 451 | G | 454 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CACAUUG | 2 |
| GAUCAC | 2 |
| UUCGGGA | 1 |
| CUUCGG | 1 |
| GAU(PYO)AC | 1 |
| GAUUAC | 1 |
| CAACAG | 1 |
| CUGAUG | 1 |
| CGUAUUG | 1 |
| CGACACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| ACAUU | 2 |
| AUCA | 2 |
| UCGGG | 1 |
| UUCG | 1 |
| AU(PYO)A | 1 |
| AUUA | 1 |
| AACA | 1 |
| UGAU | 1 |
| GUAUU | 1 |
| GACAC | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- tRNA anticodon loop with synthetase (1)
- UNCG (1)
- Basepair signature
- cWW-F-F
- Heat map statistics
- Min 0.08 | Avg 0.27 | Max 0.97
Coloring options: