Motif HL_41152.1 Version HL_41152.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 1-4 | ||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_1H4S_002 | 1H4S | 0.4709 | 3 | T | tRNA | U | 32 | U | 33 | C | 34 | A | 38 | cWW |
2 | HL_8C3A_076 | 8C3A | 0.3314 | 3 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | G | 114 | cWW |
3 | HL_5TBW_075 | 5TBW | 0.3180 | 3 | 4 | 5.8S rRNA | C | 108 | A | 109 | C | 110 | G | 114 | cWW |
4 | HL_6JQ6_004 | 6JQ6 | 0.1842 | 2 | U | RNA (81-MER) | C | 45 | U | 46 | C | 48 | G | 50 | cWW |
5 | HL_5MSF_001 | 5MSF | 0.0959 | 2 | R | RNA (18-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW |
6 | HL_1U1Y_001 | 1U1Y | 0.0980 | 2 | R | RNA (17-mer) | G | 7||||P_1 | A | 8||||P_1 | C | 10||||P_1 | C | 12||||P_1 | cWW |
7 | HL_2C4Q_001 | 2C4Q | 0.0000 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | PYO | 11||||P_1 | C | 13||||P_1 | cWW |
8 | HL_2IZN_001 | 2IZN | 0.0805 | 2 | R | RNA (19-mer) | G | 8||||P_1 | A | 9||||P_1 | U | 11||||P_1 | C | 13||||P_1 | cWW |
9 | HL_7MSF_001 | 7MSF | 0.1243 | 2 | R | RNA (14-mer) | C | 5||||P_1 | A | 6||||P_1 | C | 8||||P_1 | G | 10||||P_1 | cWW |
10 | HL_7KI3_001 | 7KI3 | 0.1149 | 2 | C | HCV genotype 1a miR-122 site-1 | C | 10 | U | 11 | A | 13 | G | 15 | cWW |
11 | HL_4V88_204 | 4V88 | 0.3590 | 3 | A6 | SSU rRNA | C | 777 | G | 778 | A | 780 | G | 783 | cWW |
12 | HL_8C3A_203 | 8C3A | 0.2461 | 3 | CM | SSU rRNA | C | 448 | G | 449 | C | 451 | G | 454 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
CACAUUG | 2 |
GAUCAC | 2 |
UUCGGGA | 1 |
CUUCGG | 1 |
GAU(PYO)AC | 1 |
GAUUAC | 1 |
CAACAG | 1 |
CUGAUG | 1 |
CGUAUUG | 1 |
CGACACG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
ACAUU | 2 |
AUCA | 2 |
UCGGG | 1 |
UUCG | 1 |
AU(PYO)A | 1 |
AUUA | 1 |
AACA | 1 |
UGAU | 1 |
GUAUU | 1 |
GACAC | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.Coloring options: