Motif HL_42046.2 Version HL_42046.2 of this group appears in releases 3.91 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_9DFE_017 | 9DFE | 0.9412 | 0 | 1A | LSU rRNA | C | 612 | G | 613 | U | 614 | U | 614|||A | G | 614|||B | A | 614|||C | G | 615 | cWW | ntsS |
| 2 | HL_5F5F_001 | 5F5F | 0.0760 | 1 | B | RNA (20-mer) | C | 7 | G | 8 | U | 9 | U | 10 | U | 12 | A | 13 | G | 14 | cWW | tsS |
| 3 | HL_5F5F_003 | 5F5F | 0.0722 | 1 | F | RNA (20-mer) | C | 7 | G | 8 | U | 9 | U | 10 | U | 12 | A | 13 | G | 14 | cWW | tsS |
| 4 | HL_5F5H_001 | 5F5H | 0.0000 | 1 | C | RNA (21-mer) | C | 8 | G | 9 | U | 10 | U | 11 | U | 13 | A | 14 | G | 15 | cWW | tsS |
| 5 | HL_5F5H_002 | 5F5H | 0.0610 | 1 | D | RNA (21-mer) | C | 8 | G | 9 | U | 10 | U | 11 | U | 13 | A | 14 | G | 15 | cWW | tsS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGUUUUAG | 2 |
| CGUUCUAG | 2 |
| CGUUGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUUUUA | 2 |
| GUUCUA | 2 |
| GUUGA | 1 |
Release history
| Release | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|
| Date | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-tSS-F-F-F
- Heat map statistics
- Min 0.04 | Avg 0.34 | Max 0.95
Coloring options: