Motif HL_66174.1 Version HL_66174.1 of this group appears in releases 0.3 to 1.15
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | 3-7 | 4-5 | 4-6 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2CZJ_001 | 2CZJ | 0.9157 | 1 | B | tmRNA (63-MER) | G | 23 | G | 24 | G | 25 | U | 26 | C | 28 | G | 29 | C | 30 | C | 31 | U | 32 | cWW | ncWW | ncWW | ncWW | |
| 2 | HL_3RKF_003 | 3RKF | 0.1784 | 0 | A | Guanine riboswitch | A | 59 | C | 60 | U | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | ||
| 3 | HL_3FO4_003 | 3FO4 | 0.0000 | 0 | A | Guanine riboswitch C74U mutant | A | 59 | C | 60 | C | 61 | G | 62 | U | 63 | A | 64 | A | 65 | A | 66 | U | 67 | cWW | cSW | cSH | ||
| 4 | HL_3LA5_003 | 3LA5 | 0.1348 | 0 | A | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW | cSH | ||
| 5 | HL_1Y26_003 | 1Y26 | 0.3905 | 0 | X | Purine riboswitch | G | 59 | C | 60 | C | 61 | U | 62 | U | 63 | A | 64 | A | 65 | A | 66 | C | 67 | cWW | cSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCCUUAAAC | 2 |
| GGGUUCGCCU | 1 |
| ACUGUAAAU | 1 |
| ACCGUAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CCUUAAA | 2 |
| GGUUCGCC | 1 |
| CUGUAAA | 1 |
| CCGUAAA | 1 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 | 1.15 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 | 2014-06-15 |
| Status | New id, 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_66174.1 | Only in the parent motif |
|---|---|---|---|
| HL_17243.1 Compare | HL_1Y26_003, HL_3FO4_003, HL_3LA5_003 | HL_3RKF_003, HL_2CZJ_001 | |
| HL_44662.1 Compare | HL_2CZJ_001 | HL_1Y26_003, HL_3RKF_003, HL_3FO4_003, HL_3LA5_003 | HL_2XZM_026, HL_2CZJ_005, HL_3P49_004 |
Children motifs
| Child motif | Common motif instances | Only in HL_66174.1 | Only in the child motif |
|---|---|---|---|
| HL_66174.2 Compare | HL_1Y26_003, HL_3RKF_003, HL_3FO4_003, HL_3LA5_003, HL_2CZJ_001 | HL_4LX6_003 |
- Annotations
-
- (5)
- Basepair signature
- cWW-R-cSW-R-cSH
- Heat map statistics
- Min 0.13 | Avg 0.43 | Max 0.97
Coloring options: