#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 5 6 71-72-6
1 HL_4WSM_2544WSM0.34992T-loop with 2 stacked bulged bases3L tRNAG64U65U66C67A68A69C72ncWWntWH
2 HL_1J2B_0021J2B0.19262T-loop relatedCtRNA(Val)G954U955U956C957A958A959C962cWWtWH
3 HL_7YSE_0037YSE0.00002T-loop with 2 stacked bulged basesE tRNAG53U54U55C56G57A58C61cWWtWH
4 HL_7UQ6_0037UQ60.07162T-loop with 2 stacked bulged basesB tRNAG64U65U66C67G68A69C72cWWtWH
5 HL_8S95_0058S950.12162T-loop with 2 stacked bulged basesCLysine tRNA scaffold,Poliovirus cloverleaf RNAG133U134U135C136A137A138C141cWWtWH
6 HL_4WT8_2174WT80.13152T-loop with 2 stacked bulged basesD4 tRNAG54U55U56C57A58A59C62cWWtWH
7 HL_4V9Q_2154V9Q0.14402T-loop with 2 stacked bulged basesDV tRNAG53U54U55C56A57A58C61cWWtWH
8 HL_2AZX_0062AZX0.17462T-loop with 2 stacked bulged basesD72-MERG553U554U555C556G557A558C561ncWWtWH
9 HL_3OVB_0013OVB0.31742T-loop with 2 stacked bulged basesCRNA (35-MER)G12U13U14C15A16A17C20cWWtWH
10 HL_7MDL_0047MDL0.19382T-loop with 2 stacked bulged basesERNA (90-MER)G53||AU54||AU55||AC56||AA57||AA58||AC61||AcWWtWH
11 HL_2DRA_0012DRA0.21572T-loop with 2 stacked bulged basesBtRNA (34-MER)G12U13U14C15G16A17C20cWWtWH
12 HL_5UD5_0035UD50.17862T-loop with 2 stacked bulged basesC tRNAG53U54U55A56G57A58C61cWWtWH
13 HL_2D6F_0062D6F0.17562T-loop with 2 stacked bulged basesFtRNAG953U954U955C956G957A958C961cWWtWH
14 HL_6UGI_0016UGI0.24452T-loop with 2 bulged bases not stackedAtRNA(Asp) acceptor stem/T stem-loopG12U13U14C15G16A17C20cWWtWH
15 HL_1GAX_0061GAX0.25172T-loop with 2 stacked bulged basesDTRNA(VAL)G952U953U954C955A956A957C960cWWtWH
16 HL_2CSX_0032CSX0.16372T-loop with 2 stacked bulged basesCRNA (75-MER)G53U54U55C56G57A58C61cWWtWH
17 HL_4V8N_1454V8N0.24562T-loop with 2 stacked bulged basesCV tRNAG55U56U57C58G59A60C63cWWtWH
18 HL_8V1H_0028V1H0.13752T-loop with 2 stacked bulged basesApre-mascRNAG38U39U40C41A42A43C46cWWtWH
19 HL_1H4S_0031H4S0.27192T-loop with 2 stacked bulged basesT tRNAG535MU54PSU55C56A57G58C61cWWtWH
20 HL_4WF9_0194WF90.52062Other HLX LSU rRNAC654A655G656U657A659U661G662cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GUUCAAGUC5
GUUCGAGUC4
GUUCAAAUC3
GUUCGAAUC2
GUUCAAUUC1
GUUCGAUUC1
GUUAGAUUC1
GUUCGACUC1
GCAGAUC1
CAGUAAAUG1
Non-Watson-Crick part of the motif
SequenceCounts
UUCAAGU5
UUCGAGU4
UUCAAAU3
UUCGAAU2
UUCAAUU1
UUCGAUU1
UUAGAUU1
UUCGACU1
(5MU)(PSU)CAGAU1
AGUAAAU1

Release history

Release3.88
Date2024-09-11
StatusNew id, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • T-loop with 2 stacked bulged bases (17)
  • T-loop related (1)
  • Other HL (1)
  • T-loop with 2 bulged bases not stacked (1)
  • Basepair signature
    cWW-tWH-F-F-F
    Heat map statistics
    Min 0.07 | Avg 0.28 | Max 0.61
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