Motif HL_45820.1 Version HL_45820.1 of this group appears in releases 3.88 to 3.88
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_4WSM_254 | 4WSM | 0.3499 | 2 | T-loop with 2 stacked bulged bases | 3L | tRNA | G | 64 | U | 65 | U | 66 | C | 67 | A | 68 | A | 69 | C | 72 | ncWW | ntWH |
2 | HL_1J2B_002 | 1J2B | 0.1926 | 2 | T-loop related | C | tRNA(Val) | G | 954 | U | 955 | U | 956 | C | 957 | A | 958 | A | 959 | C | 962 | cWW | tWH |
3 | HL_7YSE_003 | 7YSE | 0.0000 | 2 | T-loop with 2 stacked bulged bases | E | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH |
4 | HL_7UQ6_003 | 7UQ6 | 0.0716 | 2 | T-loop with 2 stacked bulged bases | B | tRNA | G | 64 | U | 65 | U | 66 | C | 67 | G | 68 | A | 69 | C | 72 | cWW | tWH |
5 | HL_8S95_005 | 8S95 | 0.1216 | 2 | T-loop with 2 stacked bulged bases | C | Lysine tRNA scaffold,Poliovirus cloverleaf RNA | G | 133 | U | 134 | U | 135 | C | 136 | A | 137 | A | 138 | C | 141 | cWW | tWH |
6 | HL_4WT8_217 | 4WT8 | 0.1315 | 2 | T-loop with 2 stacked bulged bases | D4 | tRNA | G | 54 | U | 55 | U | 56 | C | 57 | A | 58 | A | 59 | C | 62 | cWW | tWH |
7 | HL_4V9Q_215 | 4V9Q | 0.1440 | 2 | T-loop with 2 stacked bulged bases | DV | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | A | 57 | A | 58 | C | 61 | cWW | tWH |
8 | HL_2AZX_006 | 2AZX | 0.1746 | 2 | T-loop with 2 stacked bulged bases | D | 72-MER | G | 553 | U | 554 | U | 555 | C | 556 | G | 557 | A | 558 | C | 561 | ncWW | tWH |
9 | HL_3OVB_001 | 3OVB | 0.3174 | 2 | T-loop with 2 stacked bulged bases | C | RNA (35-MER) | G | 12 | U | 13 | U | 14 | C | 15 | A | 16 | A | 17 | C | 20 | cWW | tWH |
10 | HL_7MDL_004 | 7MDL | 0.1938 | 2 | T-loop with 2 stacked bulged bases | E | RNA (90-MER) | G | 53||A | U | 54||A | U | 55||A | C | 56||A | A | 57||A | A | 58||A | C | 61||A | cWW | tWH |
11 | HL_2DRA_001 | 2DRA | 0.2157 | 2 | T-loop with 2 stacked bulged bases | B | tRNA (34-MER) | G | 12 | U | 13 | U | 14 | C | 15 | G | 16 | A | 17 | C | 20 | cWW | tWH |
12 | HL_5UD5_003 | 5UD5 | 0.1786 | 2 | T-loop with 2 stacked bulged bases | C | tRNA | G | 53 | U | 54 | U | 55 | A | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH |
13 | HL_2D6F_006 | 2D6F | 0.1756 | 2 | T-loop with 2 stacked bulged bases | F | tRNA | G | 953 | U | 954 | U | 955 | C | 956 | G | 957 | A | 958 | C | 961 | cWW | tWH |
14 | HL_6UGI_001 | 6UGI | 0.2445 | 2 | T-loop with 2 bulged bases not stacked | A | tRNA(Asp) acceptor stem/T stem-loop | G | 12 | U | 13 | U | 14 | C | 15 | G | 16 | A | 17 | C | 20 | cWW | tWH |
15 | HL_1GAX_006 | 1GAX | 0.2517 | 2 | T-loop with 2 stacked bulged bases | D | TRNA(VAL) | G | 952 | U | 953 | U | 954 | C | 955 | A | 956 | A | 957 | C | 960 | cWW | tWH |
16 | HL_2CSX_003 | 2CSX | 0.1637 | 2 | T-loop with 2 stacked bulged bases | C | RNA (75-MER) | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | cWW | tWH |
17 | HL_4V8N_145 | 4V8N | 0.2456 | 2 | T-loop with 2 stacked bulged bases | CV | tRNA | G | 55 | U | 56 | U | 57 | C | 58 | G | 59 | A | 60 | C | 63 | cWW | tWH |
18 | HL_8V1H_002 | 8V1H | 0.1375 | 2 | T-loop with 2 stacked bulged bases | A | pre-mascRNA | G | 38 | U | 39 | U | 40 | C | 41 | A | 42 | A | 43 | C | 46 | cWW | tWH |
19 | HL_1H4S_003 | 1H4S | 0.2719 | 2 | T-loop with 2 stacked bulged bases | T | tRNA | G | 53 | 5MU | 54 | PSU | 55 | C | 56 | A | 57 | G | 58 | C | 61 | cWW | tWH |
20 | HL_4WF9_019 | 4WF9 | 0.5206 | 2 | Other HL | X | LSU rRNA | C | 654 | A | 655 | G | 656 | U | 657 | A | 659 | U | 661 | G | 662 | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
GUUCAAGUC | 5 |
GUUCGAGUC | 4 |
GUUCAAAUC | 3 |
GUUCGAAUC | 2 |
GUUCAAUUC | 1 |
GUUCGAUUC | 1 |
GUUAGAUUC | 1 |
GUUCGACUC | 1 |
GCAGAUC | 1 |
CAGUAAAUG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
UUCAAGU | 5 |
UUCGAGU | 4 |
UUCAAAU | 3 |
UUCGAAU | 2 |
UUCAAUU | 1 |
UUCGAUU | 1 |
UUAGAUU | 1 |
UUCGACU | 1 |
(5MU)(PSU)CAGAU | 1 |
AGUAAAU | 1 |
Release history
Release | 3.88 |
---|---|
Date | 2024-09-11 |
Status | New id, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- T-loop with 2 stacked bulged bases (17)
- T-loop related (1)
- Other HL (1)
- T-loop with 2 bulged bases not stacked (1)
- Basepair signature
- cWW-tWH-F-F-F
- Heat map statistics
- Min 0.07 | Avg 0.28 | Max 0.61
Coloring options: