Motif HL_46535.1 Version HL_46535.1 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 1-3 | |||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8J72_001 | 8J72 | 0.5340 | 2 | C | lncRNA Trincr1 | C | 4 | A | 7 | G | 8 | cWW | |
| 2 | HL_6AAX_001 | 6AAX | 0.4591 | 3 | B | RNA (28-mer) | U | 933 | A | 936 | A | 938 | cWW | |
| 3 | HL_4ZLD_001 | 4ZLD | 0.5874 | 2 | B | RNA (17-mer) | C | 7 | G | 9 | G | 11 | cWW | |
| 4 | HL_4Z31_001 | 4Z31 | 0.6171 | 2 | E | RNA (15-mer) | C | 6 | G | 8 | G | 10 | cWW | |
| 5 | HL_4QIL_002 | 4QIL | 0.6237 | 2 | C | RNA (19-mer) | C | 8 | G | 10 | G | 12 | cWW | |
| 6 | HL_4QI2_003 | 4QI2 | 0.6212 | 2 | G | RNA (23-mer) | C | 10 | G | 12 | G | 14 | cWW | |
| 7 | HL_6TQB_001 | 6TQB | 0.4352 | 2 | B | RNA (19-mer) | A | 10 | A | 12 | U | 14 | cWW | |
| 8 | HL_6TQA_003 | 6TQA | 0.3898 | 2 | G | RNA (21-mer) | A | 9 | A | 11 | U | 13 | cWW | |
| 9 | HL_4V9F_004 | 4V9F | 0.4114 | 2 | 0 | LSU rRNA | U | 125 | A | 128 | A | 129 | cWW | |
| 10 | HL_8SP9_002 | 8SP9 | 0.4332 | 2 | C | tRNA scaffold,CVB3 Cloverleaf RNA | C | 67 | U | 69 | G | 71 | cWW | |
| 11 | HL_5J7L_169 | 5J7L | 0.1356 | 6 | DA | LSU rRNA | C | 1451 | U | 1458 | G | 1459 | cWW | |
| 12 | HL_7A0S_017 | 7A0S | 0.0000 | 3 | X | LSU rRNA | C | 553 | U | 557 | G | 558 | cWW | |
| 13 | HL_4V88_192 | 4V88 | 0.1110 | 1 | A6 | SSU rRNA | C | 276 | U | 278 | G | 279 | cWW | |
| 14 | HL_4L8H_001 | 4L8H | 0.1498 | 2 | R | RNA operator hairpin | C | 9 | A | 11 | G | 13 | cWW | |
| 15 | HL_4V9F_021 | 4V9F | 0.2259 | 2 | 0 | LSU rRNA | C | 712 | U | 714 | G | 716 | cWW | |
| 16 | HL_8C3A_072 | 8C3A | 0.1979 | 1 | 1 | LSU rRNA | C | 3315 | U | 3317 | G | 3318 | cWW | |
| 17 | HL_5TBW_071 | 5TBW | 0.2063 | 1 | 1 | LSU rRNA | C | 3350 | U | 3352 | G | 3353 | cWW | |
| 18 | HL_5U30_001 | 5U30 | 0.1706 | 1 | B | sgRNA | U | 4 | G | 6 | A | 7 | cWW | |
| 19 | HL_8VTW_036 | 8VTW | 0.1294 | 5 | 1A | LSU rRNA | C | 1451 | C | 1458 | G | 1459 | cWW | |
| 20 | HL_5SWD_005 | 5SWD | 0.1626 | 3 | B | Purine riboswitch | U | 47 | C | 50 | A | 52 | cWW | |
| 21 | HL_8XZL_001 | 8XZL | 0.1355 | 2 | A | RNA (53-MER) | C | 28 | C | 31 | G | 32 | cWW | |
| 22 | HL_8X5V_003 | 8X5V | 0.2725 | 3 | B | RNA (110-mer) | U | 91 | U | 94 | A | 96 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGUG | 4 |
| CUUG | 3 |
| AUAUU | 2 |
| CAAAG | 1 |
| UGGAAA | 1 |
| UCUAA | 1 |
| CAUUG | 1 |
| CGACGGUUG | 1 |
| CUUAUG | 1 |
| CUAAG | 1 |
| CUUUG | 1 |
| UAGA | 1 |
| CAUGGACG | 1 |
| UUUCUA | 1 |
| CUUCG | 1 |
| UUUUUA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGU | 4 |
| UU | 3 |
| UAU | 2 |
| AAA | 1 |
| GGAA | 1 |
| CUA | 1 |
| AUU | 1 |
| GACGGUU | 1 |
| UUAU | 1 |
| UAA | 1 |
| UUU | 1 |
| AG | 1 |
| AUGGAC | 1 |
| UUCU | 1 |
| UUC | 1 |
| UUUU | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | New id, > 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: