Motif HL_49941.1 Version HL_49941.1 of this group appears in releases 3.89 to 3.97
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_6NWY_033 | 6NWY | 0.8616 | 4 | QV | tRNA | C | 13 | A | 14 | G | 15 | C | 17 | U | 18 | A | 21|||B | G | 22 | cWW | ||
| 2 | HL_2CSX_001 | 2CSX | 0.4621 | 4 | tRNA D-loop | C | RNA (75-MER) | C | 13 | A | 14 | G | 15 | C | 16 | U | 17 | A | 21|||A | G | 22 | cWW | |
| 3 | HL_1FFY_001 | 1FFY | 0.0000 | 4 | T | ISOLEUCYL-TRNA | C | 13 | A | 14 | G | 15 | G | 16 | U | 17 | A | 21|||A | G | 22 | cWW | cWS | |
| 4 | HL_1QU2_001 | 1QU2 | 0.0003 | 4 | T | tRNA | C | 13 | A | 14 | G | 15 | G | 16 | U | 17 | A | 21|||A | G | 22 | cWW | cWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGGUGGUUAG | 2 |
| CAGCCUGGUAG | 1 |
| CAGCUGGUCAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGGUGGUUA | 2 |
| AGCCUGGUA | 1 |
| AGCUGGUCA | 1 |
Release history
| Release | 3.89 | 3.90 | 3.91 | 3.92 | 3.93 | 3.94 | 3.95 | 3.96 | 3.97 |
|---|---|---|---|---|---|---|---|---|---|
| Date | 2024-10-09 | 2024-11-06 | 2024-12-04 | 2025-01-01 | 2025-01-29 | 2025-02-26 | 2025-03-26 | 2025-04-23 | 2025-05-21 |
| Status | New id, > 2 parents | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- tRNA D-loop (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.00 | Avg 0.41 | Max 0.86
Coloring options: