Motif HL_51824.2 Version HL_51824.2 of this group appears in releases 3.87 to 3.88

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name		1		2		3		4		5		6		7		8	1-8	2-7
1	HL_7OSM_117	7OSM	0.6497	2	ASIT	tRNA	G	53	U	54	U	55	C	56	G	57	A	58	C	61	C	62	cWW	cWW
2	HL_5TBW_050	5TBW	0.2405	1	1	LSU rRNA	U	2292	C	2293	U	2294	A	2295	A	2296	U	2297	A	2299	G	2300	cWW
3	HL_8C3A_050	8C3A	0.2063	1	1	LSU rRNA	U	2270	C	2271	U	2272	A	2273	A	2274	U	2275	A	2277	G	2278	cWW	ncWW
4	HL_7A0S_048	7A0S	0.0961	1	X	LSU rRNA	G	1932	G	1933	U	1934	A	1935	A	1936	G	1937	U	1939	C	1940	cWW	ncWB
5	HL_8VTW_048	8VTW	0.0000	1	1A	LSU rRNA	G	1949	G	1950	U	1951	A	1952	A	1953	G	1954	U	1956	C	1957	cWW	ncWB
6	HL_5J7L_182	5J7L	0.0664	1	DA	LSU rRNA	G	1949	G	1950	U	1951	A	1952	A	1953	G	1954	U	1956	C	1957	cWW	ncWB
7	HL_4WF9_046	4WF9	0.0943	1	X	LSU rRNA	G	1976	G	1977	U	1978	A	1979	A	1980	G	1981	U	1983	C	1984	cWW	ncWB
8	HL_4V9F_051	4V9F	0.1479	1	0	LSU rRNA	C	1990	A	1991	U	1992	C	1993	A	1994	G	1995	A	1997	G	1998	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
GGUAAGUUC	4
UCUAAUUAG	2
GUUCGAUUCC	1
CAUCAGUAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GUAAGUU	4
CUAAUUA	2
UUCGAUUC	1
AUCAGUA	1

Release history

Release	3.87	3.88
Date	2024-08-14	2024-09-11
Status	Updated, 1 parent	Exact match

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (8)
Basepair signature: cWW-F-F-tSH-F-F
Heat map statistics: Min 0.07 | Avg 0.25 | Max 0.69

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