Motif HL_51824.2 Version HL_51824.2 of this group appears in releases 3.87 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-7 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7OSM_117 | 7OSM | 0.6497 | 2 | ASIT | tRNA | G | 53 | U | 54 | U | 55 | C | 56 | G | 57 | A | 58 | C | 61 | C | 62 | cWW | cWW |
| 2 | HL_5TBW_050 | 5TBW | 0.2405 | 1 | 1 | LSU rRNA | U | 2292 | C | 2293 | U | 2294 | A | 2295 | A | 2296 | U | 2297 | A | 2299 | G | 2300 | cWW | |
| 3 | HL_8C3A_050 | 8C3A | 0.2063 | 1 | 1 | LSU rRNA | U | 2270 | C | 2271 | U | 2272 | A | 2273 | A | 2274 | U | 2275 | A | 2277 | G | 2278 | cWW | ncWW |
| 4 | HL_7A0S_048 | 7A0S | 0.0961 | 1 | X | LSU rRNA | G | 1932 | G | 1933 | U | 1934 | A | 1935 | A | 1936 | G | 1937 | U | 1939 | C | 1940 | cWW | ncWB |
| 5 | HL_8VTW_048 | 8VTW | 0.0000 | 1 | 1A | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB |
| 6 | HL_5J7L_182 | 5J7L | 0.0664 | 1 | DA | LSU rRNA | G | 1949 | G | 1950 | U | 1951 | A | 1952 | A | 1953 | G | 1954 | U | 1956 | C | 1957 | cWW | ncWB |
| 7 | HL_4WF9_046 | 4WF9 | 0.0943 | 1 | X | LSU rRNA | G | 1976 | G | 1977 | U | 1978 | A | 1979 | A | 1980 | G | 1981 | U | 1983 | C | 1984 | cWW | ncWB |
| 8 | HL_4V9F_051 | 4V9F | 0.1479 | 1 | 0 | LSU rRNA | C | 1990 | A | 1991 | U | 1992 | C | 1993 | A | 1994 | G | 1995 | A | 1997 | G | 1998 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGUAAGUUC | 4 |
| UCUAAUUAG | 2 |
| GUUCGAUUCC | 1 |
| CAUCAGUAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GUAAGUU | 4 |
| CUAAUUA | 2 |
| UUCGAUUC | 1 |
| AUCAGUA | 1 |
- Annotations
-
- (8)
- Basepair signature
- cWW-F-F-tSH-F-F
- Heat map statistics
- Min 0.07 | Avg 0.25 | Max 0.69
Coloring options: