Motif HL_52953.2 Version HL_52953.2 of this group appears in releases 3.93 to 3.96
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 3-4 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4RUM_001 | 4RUM | 0.6395 | 1 | A | NiCo riboswitch RNA | C | 27 | A | 28 | G | 29 | G | 31 | C | 32 | G | 33 | cWW | |
| 2 | HL_3ADD_003 | 3ADD | 0.3338 | 0 | C | Selenocysteine transfer RNA | C | 47|||D | G | 47|||E | A | 47|||F | G | 47|||G | U | 47|||H | G | 47|||I | cWW | |
| 3 | HL_8UO6_006 | 8UO6 | 0.0000 | 0 | B | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | C | 49 | A | 50 | A | 51 | U | 52 | G | 53 | G | 54 | cWW | |
| 4 | HL_6U8D_001 | 6U8D | 0.2853 | 0 | A | JIIIabc RNA (68-MER) | G | 161 | A | 162 | G | 163 | U | 164 | A | 165 | C | 166 | cWW | ncsS |
| 5 | HL_4XWF_001 | 4XWF | 0.3376 | 0 | A | ZMP/ZTP riboswitch | G | 24 | G | 25 | A | 26 | A | 27 | A | 28 | C | 29 | cWW | |
| 6 | HL_8UO6_002 | 8UO6 | 0.5197 | 0 | A | HIV-1 Rev Response Element Stem-Loop II with tRNA scaffold | C | 49 | A | 50 | A | 51 | U | 52 | G | 53 | G | 54 | cWW | |
| 7 | HL_2QUS_003 | 2QUS | 0.6545 | 0 | A | Hammerhead ribozyme | C | 42 | G | 43 | U | 44 | G | 45 | A | 46 | G | 47 | cWW | |
| 8 | HL_2QUW_003 | 2QUW | 0.6543 | 0 | B | Hammerhead ribozyme, cleaved fragment | C | 42 | G | 43 | U | 44 | G | 45 | A | 46 | G | 47 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAAUGG | 2 |
| CGUGAG | 2 |
| CAGAGCG | 1 |
| CGAGUG | 1 |
| GAGUAC | 1 |
| GGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAUG | 2 |
| GUGA | 2 |
| AGAGC | 1 |
| GAGU | 1 |
| AGUA | 1 |
| GAAA | 1 |
- Annotations
-
- (8)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.52 | Max 0.94
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