Motif HL_53171.1 Version HL_53171.1 of this group appears in releases 3.77 to 3.79
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 1-6 | 2-4 | 2-5 | ||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3OIN_001 | 3OIN | 0.6875 | 2 | C | RNA (14-mer) | C | 4 | U | 5 | A | 8 | A | 9 | C | 10 | G | 11 | cWW | |||
| 2 | HL_2A64_006 | 2A64 | 0.5714 | 6 | A | ribonuclease P RNA | C | 313 | G | 314 | G | 321 | C | 322 | A | 323 | G | 324 | cWW | ntSH | ||
| 3 | HL_4V9F_055 | 4V9F | 0.4964 | 3 | 0 | LSU rRNA | C | 2281 | U | 2282 | G | 2286 | C | 2287 | G | 2288 | G | 2289 | cWW | |||
| 4 | HL_5TBW_054 | 5TBW | 0.6152 | 3 | 1 | LSU rRNA | C | 2616 | U | 2617 | G | 2621 | C | 2622 | G | 2623 | G | 2624 | cWW | |||
| 5 | HL_4WF9_049 | 4WF9 | 0.4712 | 3 | X | LSU rRNA | C | 2275 | U | 2276 | G | 2280 | C | 2281 | G | 2282 | G | 2283 | cWW | |||
| 6 | HL_7A0S_052 | 7A0S | 0.4712 | 3 | X | LSU rRNA | C | 2227 | U | 2228 | G | 2232 | C | 2233 | G | 2234 | G | 2235 | cWW | |||
| 7 | HL_4V84_034 | 4V84 | 0.4286 | 2 | AV | RNA (34-MER) | U | 6185 | U | 6186 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | cWW | |||
| 8 | HL_3LA5_002 | 3LA5 | 0.1578 | 2 | A | Purine riboswitch | G | 46 | C | 47 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | |||
| 9 | HL_3RKF_008 | 3RKF | 0.1254 | 2 | C | Guanine riboswitch | G | 46 | U | 47 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 10 | HL_4FEN_002 | 4FEN | 0.0000 | 2 | B | A24U/U25A/A46G mutant of the B. subtilis xpt-pbuX guanine riboswitch aptamer domain | G | 46 | U | 47 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 11 | HL_1Y27_002 | 1Y27 | 0.0614 | 2 | X | Purine riboswitch | G | 46 | U | 47 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | |||
| 12 | HL_1Y26_002 | 1Y26 | 0.0595 | 2 | X | Purine riboswitch | G | 46 | U | 47 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 13 | HL_4XNR_002 | 4XNR | 0.0725 | 2 | X | Purine riboswitch | G | 46 | U | 47 | C | 50 | U | 51 | A | 52 | C | 53 | cWW | ntWH | ||
| 14 | HL_4LX6_002 | 4LX6 | 0.1232 | 2 | A | Purine riboswitch | G | 46 | C | 47 | C | 50 | C | 51 | A | 52 | C | 53 | cWW | |||
| 15 | HL_7TZS_001 | 7TZS | 0.4934 | 1 | X | TPP riboswitch (THI element) | C | 27 | U | 28 | C | 30 | G | 31 | U | 32 | G | 33 | cWW | tWW | ||
| 16 | HL_7RQB_065 | 7RQB | 0.6812 | 0 | Other HL (H) | 1A | LSU rRNA | C | 2701 | U | 2702 | C | 2703 | C | 2704 | A | 2705 | G | 2706 | cWW | cSH | |
| 17 | HL_3IGI_009 | 3IGI | 0.6936 | 0 | Other HL | A | Group IIC intron | C | 368 | G | 369 | A | 370 | A | 371 | C | 372 | G | 373 | cWW | tSW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GUUUCUAC | 5 |
| CUGGGGCGG | 4 |
| GCUUCCAC | 2 |
| CUUCAACG | 1 |
| CGGCGCAUGCAG | 1 |
| UUAGGUAG | 1 |
| CUGCGUG | 1 |
| CUCCAG | 1 |
| CGAACG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUUCUA | 5 |
| UGGGGCG | 4 |
| CUUCCA | 2 |
| UUCAAC | 1 |
| GGCGCAUGCA | 1 |
| UAGGUA | 1 |
| UGCGU | 1 |
| UCCA | 1 |
| GAAC | 1 |
- Annotations
-
- (15)
- Other HL (1)
- Other HL (H) (1)
- Basepair signature
- cWW-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.46 | Max 0.86
Coloring options: