Motif HL_54035.1 Version HL_54035.1 of this group appears in releases 3.2 to 3.2
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3R4F_003 | 3R4F | 0.2461 | 1 | A | pRNA | A | 24||||15_545 | U | 25||||15_545 | U | 26||||15_545 | G | 27||||15_545 | A | 28||||15_545 | U | 30||||15_545 | U | 31||||15_545 | cWW | cwW | |
| 2 | HL_3R4F_001 | 3R4F | 0.2461 | 1 | A | pRNA | A | 24 | U | 25 | U | 26 | G | 27 | A | 28 | U | 30 | U | 31 | cWW | cwW | |
| 3 | HL_4LFB_025 | 4LFB | 0.1876 | 1 | A | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
| 4 | HL_5J7L_024 | 5J7L | 0.1460 | 1 | AA | SSU rRNA | G | 1089 | U | 1090 | U | 1091 | A | 1092 | A | 1093 | U | 1095 | C | 1096 | cWW | cwW | |
| 5 | HL_4V5O_063 | 4V5O | 0.0000 | 1 | BA | SSU rRNA | G | 1281 | U | 1282 | U | 1283 | A | 1284 | A | 1285 | U | 1287 | C | 1288 | cWW | cwW | |
| 6 | HL_4V88_215 | 4V88 | 0.2179 | 1 | A6 | SSU rRNA | C | 1309 | U | 1310 | U | 1311 | A | 1312 | A | 1313 | U | 1315 | G | 1316 | cWW | cwW | |
| 7 | HL_4V8P_108 | 4V8P | 0.3878 | 1 | D1 | LSU rRNA | C | 1104 | U | 1105 | U | 1106 | A | 1107 | A | 1108 | U | 1110 | G | 1111 | cWW | cwW | |
| 8 | HL_4WF9_019 | 4WF9 | 0.6368 | 2 | X | LSU rRNA | C | 654 | A | 655 | G | 656 | U | 657 | A | 659 | U | 661 | G | 662 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUGAGUU | 2 |
| GUUAAGUC | 2 |
| GUUAAUUC | 1 |
| CUUAAUUG | 1 |
| CUUAAAUG | 1 |
| CAGUAAAUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUGAGU | 2 |
| UUAAGU | 2 |
| UUAAUU | 2 |
| UUAAAU | 1 |
| AGUAAAU | 1 |
Release history
| Release | 3.2 |
|---|---|
| Date | 2018-09-26 |
| Status | New id, no parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.
Coloring options: