Motif HL_56241.3 Version HL_56241.3 of this group appears in releases 3.88 to 3.88
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | 1 | 2 | 3 | 4 | 5 | 1-5 | 2-4 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_8C3A_197 | 8C3A | 0.6233 | 3 | T-loop with 1 bulged base | CM | G | 241 | A | 242 | U | 243 | U | 246 | C | 248 | cWW | |
| 2 | HL_4V88_191 | 4V88 | 0.6228 | 3 | T-loop with 1 bulged base | A6 | G | 243 | A | 244 | U | 245 | U | 248 | C | 250 | cWW | |
| 3 | HL_4V9F_039 | 4V9F | 0.6226 | 2 | Other HL | 0 | C | 1594 | G | 1595 | U | 1596 | U | 1599 | G | 1600 | cWW | |
| 4 | HL_7A0S_023 | 7A0S | 0.4167 | 2 | X | U | 792 | G | 793 | A | 795 | A | 796 | G | 798 | cWW | cSW | |
| 5 | HL_5M3H_001 | 5M3H | 0.0000 | 1 | V | U | 3 | A | 4 | G | 5 | A | 7 | A | 8 | cWW | ||
| 6 | HL_4WSB_001 | 4WSB | 0.0610 | 1 | V | U | 3 | A | 4 | G | 5 | A | 7 | A | 8 | cWW | ||
| 7 | HL_4WRT_001 | 4WRT | 0.0698 | 1 | V | U | 3 | A | 4 | G | 5 | A | 7 | A | 8 | cWW | ncSW | |
| 8 | HL_6QCW_001 | 6QCW | 0.1084 | 1 | V | U | 3 | A | 4 | G | 5 | A | 7 | A | 8 | cWW | ncSW | |
| 9 | HL_5FMZ_001 | 5FMZ | 0.1192 | 1 | H | U | 3 | A | 4 | G | 5 | A | 7 | A | 8 | cWW | ||
| 10 | HL_7Z42_002 | 7Z42 | 0.1279 | 1 | V | U | 3 | A | 4 | G | 5 | A | 7 | A | 8 | cWW | cSW | |
| 11 | HL_7Z4O_002 | 7Z4O | 0.1500 | 1 | VVV | U | 3 | A | 4 | G | 5 | A | 7 | A | 8 | cWW | ||
| 12 | HL_7ENI_002 | 7ENI | 0.2533 | 2 | B | C | 59 | A | 60 | A | 61 | A | 63 | G | 65 | cWW | cSW | |
| 13 | HL_7EL1_002 | 7EL1 | 0.2500 | 2 | B | C | 59 | A | 60 | A | 61 | A | 63 | G | 65 | cWW | cSW | |
| 14 | HL_5J7L_140 | 5J7L | 0.3719 | 1 | DA | C | 225 | A | 226 | A | 227 | C | 229 | G | 230 | cWW | tSH | |
| 15 | HL_4WF9_007 | 4WF9 | 0.4426 | 1 | X | A | 228 | A | 229 | A | 230 | A | 231 | U | 233 | cWW | cSW | |
| 16 | HL_5TBW_002 | 5TBW | 0.4811 | 1 | 1 | C | 69 | A | 70 | A | 71 | C | 72 | G | 74 | cWW | cSW | |
| 17 | HL_8C3A_002 | 8C3A | 0.4810 | 1 | 1 | C | 68 | A | 69 | A | 70 | C | 71 | G | 73 | cWW | cSW | |
| 18 | HL_7A0S_007 | 7A0S | 0.3459 | 1 | X | A | 202 | G | 203 | A | 204 | A | 205 | U | 207 | cWW | cSW | |
| 19 | HL_8VTW_006 | 8VTW | 0.8332 | 1 | 1A | A | 225 | G | 226 | A | 227 | A | 228 | U | 230 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UAGUAA | 7 |
| GAUGAUUC | 2 |
| CAAAAUG | 2 |
| CAACCG | 2 |
| CGUAAUG | 1 |
| UGAAAAG | 1 |
| AAAAUU | 1 |
| CAACAG | 1 |
| AGAAUU | 1 |
| AGAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGUA | 7 |
| AUGAUU | 2 |
| AAAAU | 2 |
| AACC | 2 |
| GUAAU | 1 |
| GAAAA | 1 |
| AAAU | 1 |
| AACA | 1 |
| GAAU | 1 |
| GAAA | 1 |
Release history
| Release | 3.88 |
|---|---|
| Date | 2024-09-11 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (16)
- T-loop with 1 bulged base (2)
- Other HL (1)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.45 | Max 0.92
Coloring options: