#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4 51-52-4
1 HL_8C3A_1978C3A0.62333T-loop with 1 bulged base (H)CM SSU rRNAG241A242U243U246C248cWW
2 HL_4V88_1914V880.62283T-loop with 1 bulged baseA6 SSU rRNAG243A244U245U248C250cWW
3 HL_4V9F_0394V9F0.62262Other HL0 LSU rRNAC1594G1595U1596U1599G1600cWW
4 HL_7A0S_0237A0S0.41672X LSU rRNAU792G793A795A796G798cWWcSW
5 HL_5M3H_0015M3H0.00001VRNA 5'-pAGUAGUAACAAGAGGGU3A4G5A7A8cWW
6 HL_4WSB_0014WSB0.06101VInfluenza A polymerase vRNA promoter 5' endU3A4G5A7A8cWW
7 HL_4WRT_0014WRT0.06981VInfluenza virus polymerase vRNA promoter 5' endU3A4G5A7A8cWWncSW
8 HL_6QCW_0016QCW0.10841VRNA (14-mer)U3A4G5A7A8cWWncSW
9 HL_5FMZ_0015FMZ0.11921HRNA (12-mer)U3A4G5A7A8cWW
10 HL_7Z42_0027Z420.12791VRNA (13-mer)U3A4G5A7A8cWWcSW
11 HL_7Z4O_0027Z4O0.15001VVVRNA (12-mer)U3A4G5A7A8cWW
12 HL_7ENI_0027ENI0.25332BsgRNA (74-MER)C59A60A61A63G65cWWcSW
13 HL_7EL1_0027EL10.25002BRNA (73-MER)C59A60A61A63G65cWWcSW
14 HL_5J7L_1405J7L0.37191DA LSU rRNAC225A226A227C229G230cWWtSH
15 HL_4WF9_0074WF90.44261X LSU rRNAA228A229A230A231U233cWWcSW
16 HL_5TBW_0025TBW0.481111 LSU rRNAC69A70A71C72G74cWWcSW
17 HL_8C3A_0028C3A0.481011 LSU rRNAC68A69A70C71G73cWWcSW
18 HL_7A0S_0077A0S0.34591X LSU rRNAA202G203A204A205U207cWWcSW
19 HL_8VTW_0068VTW0.833211A LSU rRNAA225G226A227A228U230cWW

3D structures

Complete motif including flanking bases
SequenceCounts
UAGUAA7
GAUGAUUC2
CAAAAUG2
CAACCG2
CGUAAUG1
UGAAAAG1
AAAAUU1
CAACAG1
AGAAUU1
AGAAAU1
Non-Watson-Crick part of the motif
SequenceCounts
AGUA7
AUGAUU2
AAAAU2
AACC2
GUAAU1
GAAAA1
AAAU1
AACA1
GAAU1
GAAA1

Release history

Release3.88
Date2024-09-11
StatusUpdated, 2 parents

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (16)
  • T-loop with 1 bulged base (1)
  • Other HL (1)
  • T-loop with 1 bulged base (H) (1)
  • Basepair signature
    cWW-F-F-F
    Heat map statistics
    Min 0.06 | Avg 0.45 | Max 0.92
    Help

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