Motif HL_57014.1 Version HL_57014.1 of this group appears in releases 0.3 to 1.4
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-7 | 2-9 | 3-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_2XZM_010 | 2XZM | 0.0000 | 1 | A | 18S RRNA | C | 384 | C | 385 | U | 386 | G | 387 | A | 388 | G | 389 | A | 390 | A | 391 | A | 392 | C | 393 | G | 395 | cWW | ntWH | ||
| 2 | HL_3U5F_010 | 3U5F | 0.4120 | 1 | 6 | 18S rRNA | C | 393 | C | 394 | U | 395 | G | 396 | A | 397 | G | 398 | A | 399 | A | 400 | A | 401 | C | 402 | G | 404 | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUGAGAAACGG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAGAAACG | 2 |
Release history
| Release | 0.3 | 0.4 | 0.5 | 0.6 | 0.7 | 0.8 | 1.0 | 1.1 | 1.2 | 1.3 | 1.4 |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 | 2013-04-06 | 2013-05-04 | 2013-06-01 | 2013-07-03 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_57014.1 | Only in the parent motif |
|---|---|---|---|
| HL_72964.1 Compare | HL_2XZM_010 | HL_3U5F_010 | HL_3O30_009 |
Children motifs
| Child motif | Common motif instances | Only in HL_57014.1 | Only in the child motif |
|---|---|---|---|
| HL_86398.1 Compare | HL_3U5F_010 | HL_2XZM_010 | HL_4BPP_010 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-tWH-R-R-R-R-R-R
- Heat map statistics
- Min 0.41 | Avg 0.21 | Max 0.41
Coloring options: