Motif HL_86398.1 Version HL_86398.1 of this group appears in releases 1.5 to 1.14
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 3-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5F_010 | 3U5F | 0.0000 | 1 | 6 | 18S rRNA | C | 393 | C | 394 | U | 395 | G | 396 | A | 397 | G | 398 | A | 399 | A | 400 | A | 401 | C | 402 | G | 404 | cWW | tWH | tWH |
| 2 | HL_4BPP_010 | 4BPP | 0.1660 | 1 | A | 18S RRNA | C | 384 | C | 385 | U | 386 | G | 387 | A | 388 | G | 389 | A | 390 | A | 391 | A | 392 | C | 393 | G | 395 | cWW | tWH | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CCUGAGAAACGG | 2 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUGAGAAACG | 2 |
Release history
| Release | 1.5 | 1.6 | 1.7 | 1.8 | 1.9 | 1.10 | 1.11 | 1.12 | 1.13 | 1.14 |
|---|---|---|---|---|---|---|---|---|---|---|
| Date | 2013-08-03 | 2013-08-31 | 2013-09-28 | 2013-11-04 | 2013-12-07 | 2014-01-04 | 2014-02-01 | 2014-03-01 | 2014-03-29 | 2014-04-27 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in HL_86398.1 | Only in the parent motif |
|---|---|---|---|
| HL_57014.1 Compare | HL_3U5F_010 | HL_4BPP_010 | HL_2XZM_010 |
Children motifs
| Child motif | Common motif instances | Only in HL_86398.1 | Only in the child motif |
|---|---|---|---|
| HL_86398.2 Compare | HL_4BPP_010, HL_3U5F_010 | HL_4CUX_010 |
- Annotations
-
- (2)
- Basepair signature
- cWW-R-tWH-R-tWH-R-R-R
- Heat map statistics
- Min 0.17 | Avg 0.08 | Max 0.17
Coloring options: