Motif HL_62044.1 Version HL_62044.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-8 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3B31_001 | 3B31 | 0.9190 | 1 | A | RNA (29-MER) | A | 6184 | U | 6185 | A | 6187 | G | 6188 | G | 6189 | U | 6190 | A | 6191 | G | 6192 | U | 6193 | cWW | |
| 2 | HL_2JLT_001 | 2JLT | 0.0000 | 1 | A | R06 | G | 5 | G | 6 | C | 8 | C | 9 | C | 10 | A | 11 | G | 12 | A | 13 | C | 14 | cWW | cWW |
| 3 | HL_2ZNI_002 | 2ZNI | 0.5538 | 0 | C | bacterial tRNA | A | 31 | C | 32 | U | 33 | C | 34 | U | 35 | A | 36 | A | 37 | A | 38 | U | 39 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| AUUAGGUAGU | 1 |
| GGUCCCAGAC | 1 |
| ACUCUAAAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UUAGGUAG | 1 |
| GUCCCAGA | 1 |
| CUCUAAA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_62044.1 | Only in the child motif |
|---|---|---|---|
| HL_19261.1 Compare | HL_2JLT_001 | HL_2ZNI_002, HL_3B31_001 | HL_3U5F_001, HL_1FJG_001, HL_2XZM_001, HL_3T4B_003 |
| HL_74465.1 Compare | HL_2ZNI_002 | HL_2JLT_001, HL_3B31_001 | HL_2AZX_002, HL_1U0B_002, HL_2AKE_002, HL_3L0U_002, HL_1J1U_002, HL_3TUP_002, HL_2CV1_005, HL_1EIY_002, HL_1J2B_001, HL_1J2B_003 |
| HL_42969.1 Compare | HL_3B31_001 | HL_2JLT_001, HL_2ZNI_002 |
Coloring options: