Motif HL_62578.1 Version HL_62578.1 of this group appears in releases 0.1 to 0.2
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 1-14 | 2-11 | 2-13 | 3-12 | 4-9 | 5-8 | 6-7 | 11-13 | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3O58_068 | 3O58 | 0.0000 | 1 | 1 | 25S ribosomal RNA | C | 3110 | U | 3111 | G | 3112 | A | 3113 | A | 3114 | C | 3115 | C | 3117 | C | 3118 | U | 3119 | C | 3120 | U | 3121 | A | 3122 | A | 3123 | G | 3124 | cWW | ntWH | tSH | ntHW | ||||
| 2 | HL_3PYO_066 | 3PYO | 0.2191 | 1 | A | 23S ribosomal RNA | C | 2745 | U | 2746 | G | 2747 | A | 2748 | A | 2749 | A | 2750 | C | 2752 | A | 2753 | U | 2754 | C | 2755 | U | 2756 | A | 2757 | A | 2758 | G | 2759 | cWW | tWH | ntSH | tSH | ntHW | tHW | ncSH | cWH |
| 3 | HL_2ZJR_064 | 2ZJR | 0.2434 | 1 | X | LSU rRNA | C | 2725 | U | 2726 | G | 2727 | A | 2728 | A | 2729 | A | 2730 | C | 2732 | A | 2733 | U | 2734 | C | 2735 | U | 2736 | A | 2737 | A | 2738 | G | 2739 | cWW | tWH | tHW | ntHW | ncWH | |||
| 4 | HL_1S72_068 | 1S72 | 0.2979 | 1 | 0 | LSU rRNA | C | 2780 | U | 2781 | G | 2782 | A | 2783 | A | 2784 | C | 2785 | C | 2787 | A | 2788 | U | 2789 | C | 2790 | U | 2791 | A | 2792 | A | 2793 | G | 2794 | cWW | tWH | ntSH | tSH | tHW | tHW | ntSW | cWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CUGAAAGCAUCUAAG | 2 |
| CUGAACGCCUCUAAG | 1 |
| CUGAACGCAUCUAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGAAAGCAUCUAA | 2 |
| UGAACGCCUCUAA | 1 |
| UGAACGCAUCUAA | 1 |
Release history
Parent motifs
This motif has no parent motifs.
Children motifs
| Child motif | Common motif instances | Only in HL_62578.1 | Only in the child motif |
|---|---|---|---|
| HL_70420.1 Compare | HL_1S72_068, HL_2ZJR_064 | HL_3PYO_066, HL_3O58_068 | HL_3V2F_064, HL_4A1B_067, HL_3U5H_068, HL_2QBG_068 |
Coloring options: